Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00793 ATGGCAGATCGGAATCCTAGCTTAAACGCCGCCCATTTCGTTGATCTTCGAAGCGGTTTCTGTCCTCAGACGAAGATTTTCCGTAGCCTCCGACCACCCCTCTTAATTCCGCCATTATCTCAGCCACTATCCGTTACCGAACACGCCCTTTCTCTCCTTCAATCGTCCCCTCCTCCTTCAAATGCCGCCGTTCTCGTCGACTCCAACTCCGGTGTCCATCTCTCCTATGCCATTTTTCTCCGTCAAATACGAACCCTTGCCTCTAATCTTAAAGCTTTAACCTCACTCTCCAATGGTCAAGTGGCTTTTATTCTCGCACCGACTTCTCTGGAAGTCCCTGTGTTGTATTTTGCGCTGTTATCTCTCGGTGTTATTATCTCTCCGGCTAATCCGATTGGTTCCGATTCGGAGATTTCTCATCAGATTCGACTCAGTGAACCGGTCATTGCCTTCGCTACATCCTCCACGGCGTCCAAGCTCCCCAAGCTTCAACTCGGCACCGTCCTGATCGATTCTCCTGCGTTTCTCTCCATGATGACCGAAATCAATAGATCTGATGGTCTTGCCGACGTCAAAGTCGATCAATCCGACTCGGCGGCGATCCTGTACTCGTCAGGAACGACAGGACGAGTGAAAGGCGTGTTACTGAGTCATCGAAACCTTATTGTGGTGAACTCTAGTCCTAATCCTCTTCTATCTGAGGTCAACAACGGAGAGACGGAGCCACGTCAGGTGTCTCTGTGTCTGTTGCCTCTGTTCCATGTTTTCGGATTCGTCATGTTGCTTCGAGCGATTTCACGAGGAGAAACATTGGTTCTGATGCAAAAATTCGACTTCGTGGAGATGCTATCAGCAGTAGAGAAGTTTAGAGTTACGTACATCCCAGTTTCTCCGCCGCTAGTGGTGGCGCTGGCCAAGTCGGAACTGGTGGCGAAATACGATCTCAGTTCTCTACAAGTTTTGGGGTGCGGCGGCGCTCCTCTTGGGAAAGAAGTCATCGAGAAATTCCATCAGAAATTGCCCAAAGTTGAAATTATCCAGGGATATGGGTTGACAGAGAGTACAGCGGGGGCAGCAAGAAGTATGGGGCCCGAGGAAAGCAGCAACACGAAGTCAGTAGGCCGCCTATCTGAAAATATGGAAGCCATGATAGTGGATCCTGCTTCTGGAGAGGCCTTGCCTCCTGGCCATAGAGGAGAGCTTTGGCTGCGAGGCCCAGGAATCATGAAAGGTTACGTGGGAGATGCCGATGCAACTACCGAAACCCTGCATCCAGATGGATGGCTAAAGACTGGTGATCTTTGCTATTTTGATTCTGATGGATTCCTCTACATTGTTGATAGATTAAAAGAATTGATCAAGTACAAGGCTTACCAGGTCCCACCTGCAGAATTGGAACATTTGCTTCAATCCAACCCTGAAATCATTGACGCTGCTGTGATTCCCTATCCCGATGAAGATGCTGGAGAGATTCCCATGGCTTATGTTGTTAGAAAGCCTGGAAGCAATGTCACTGAGGCTCAAGTTATTGATTTCATTGCTAAACAGGTTGCACCGTACAAGAAAATTCGACGAGTTTCGTTTATCGACGCGATCCCGAAATCGCCTGCAGGCAAGATTCTGAGGAGGGAGCTGACCCAACATGCTCGCTCTCATGGTTCTAATAAGCTCTAA 1674 48.92 MADRNPSLNAAHFVDLRSGFCPQTKIFRSLRPPLLIPPLSQPLSVTEHALSLLQSSPPPSNAAVLVDSNSGVHLSYAIFLRQIRTLASNLKALTSLSNGQVAFILAPTSLEVPVLYFALLSLGVIISPANPIGSDSEISHQIRLSEPVIAFATSSTASKLPKLQLGTVLIDSPAFLSMMTEINRSDGLADVKVDQSDSAAILYSSGTTGRVKGVLLSHRNLIVVNSSPNPLLSEVNNGETEPRQVSLCLLPLFHVFGFVMLLRAISRGETLVLMQKFDFVEMLSAVEKFRVTYIPVSPPLVVALAKSELVAKYDLSSLQVLGCGGAPLGKEVIEKFHQKLPKVEIIQGYGLTESTAGAARSMGPEESSNTKSVGRLSENMEAMIVDPASGEALPPGHRGELWLRGPGIMKGYVGDADATTETLHPDGWLKTGDLCYFDSDGFLYIVDRLKELIKYKAYQVPPAELEHLLQSNPEIIDAAVIPYPDEDAGEIPMAYVVRKPGSNVTEAQVIDFIAKQVAPYKKIRRVSFIDAIPKSPAGKILRRELTQHARSHGSNKL 557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6766961 6770703 - CmaCh13G007930.1 Cma13g00793 306620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00793 557 Pfam AMP-binding enzyme C-terminal domain 464 539 IPR025110 -
Cma13g00793 557 Gene3D - 451 553 IPR045851 -
Cma13g00793 557 SUPERFAMILY Acetyl-CoA synthetase-like 60 551 - -
Cma13g00793 557 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 35 547 - -
Cma13g00793 557 Gene3D - 35 450 IPR042099 -
Cma13g00793 557 CDD 4CL 48 545 - -
Cma13g00793 557 Pfam AMP-binding enzyme 61 455 IPR000873 -
Cma13g00793 557 ProSitePatterns Putative AMP-binding domain signature. 201 212 IPR020845 -
Cma13g00793 557 PANTHER 4-COUMARATE--COA LIGASE-LIKE 9 35 547 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00793 Cma-Chr13:6766961 Cma14g00225 Cma-Chr14:991400 2.24E-135 dispersed
Cma05g00247 Cma-Chr5:1044610 Cma13g00793 Cma-Chr13:6766961 3.20E-13 transposed
Cma13g00793 Cma-Chr13:6766961 Cma18g00222 Cma-Chr18:1201248 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00793 K01904 - csv:101213796 888.641