Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00801 ATGGTTTCAACGAGAAGAAGTGGATCTCTCTCTGGAAGCAACAGCAAAAGATCTTCGTCCTCCGAGGATAAGCCATCGTCCCCGAAGCGTCAAAAGGTGGAAAATGGCTGTGGTTCAGAGAAATCGATGCCGGTGGTGGAGAATTCTAAAGAATTATGCACCCCGCCGACTGTGGATCCTGGAGATAATGGACCTGGCGGTGGTCCGATCGCCGGAGTTGACGTTGGAGAAGGTGTGAGCTCTTTGAAGGAGGATGCTGCACCAGCGGCTGTCGCTGTTACCACTCCTATCGCCGAGGGAACTTCGCTGGTGGGGGATAAGCCTAGGAGTTCATTTTCATCCTGGAGTCTCTATGCTGCGAAGCAGAATCCAAATTTTGAGACGACAACTCCTTGGTGTAGGCTTCTATCACAGTTCGGTCAGAACCCCAATGTTGATATTTTCTCGTCAAATTTTACCATTGGTTCTAGTAGAGGTTGCAACTTTCCCTTGAAGGATCACACGATTAGCGGGACACTTTGCAAGATCAAGCACACTCAGCGTGAGGGTAGTGCTGTAGCAGTGCTTGAAAGTACGGGAGGCAAGGGATCGGTGATGGTTAATGGGTTGACCGTCAAGAAGAGCTCCAGCTGTGTGCTAAATTCTGGTGACGAAGTGGTCTTTGGTGCTTTGGGGAACCATGCTTATATATTTCAGCAACTTATGAATGAGGTTTCTGTTAAAGGTTTAGATGTTCAAAGTGGTGTTGGAAAATTCCTGCAGCTCGGAAAGAGGACTGGTGATCCTTCTGCTGTGGCTGGGGCCTCGATATTGGCATCTCTTTCAAGCCTCAGGCAGGATATATCACGTTGGAAGCCTCCCTCTCAGACCAGCGGTAAAACACACCAAGGTGCTGAACTTTCTAATTCTGTTGTTCATGATGCAATGGAACTTGAAATTGATGCTCTTGAAGCCAACACAAATCCAGAAGTACGAAATGACAAAGCTGTAGACCCAAGCACCACTAGCAGGAATCTTCATCCTGGCTCCAATTCAGATGCTCTCATAGAGGCAGGCAATGTAAAACTCTCTGGGGTGAATGATTTGATAGGGCCTTTGTTCAGGATGTTAGCTCAGTCAACTAGTTGTAAACTGAAATTGAGCAAAAGTATCTGTAAACAGGTAATGGAAGAAAGAAACCAGTGGATTGGGGAGTTGCAGCCAGCATCAACCTCAGGAATGTCTTTGCGGTGTGCAGCATTTAAAGAAGATGTTCATGCAGGAATTGTTGATGGAAGAGACTTAGAAGTTTCATTTGAGAACTTTCCATACTATTTGAGTGAGAATACGAAGAACGTGCTTATTGCTGCTTCTTACATACACTTGAAGCATAAAGAACATTCAAAGTATGCCTCAGAATTAAATACAGTGAATCCACGAATTCTACTTTCTGGTCCTGCTGGTTCAGAGATATATCAAGAGATGCTAGCGAAGGCACTTGCTAACTACTACGGAGCAAAGCTACTCATATTTGACAGCCATTCGTTTTTGGGTGGTTTATCATCAAAGGAAGCAGAGCTGCTGAAGGATGGAGTTAATGCAGCAAAGTCTTGTAGTTGTTCAAAACAGAGTACCGTATCTACTGAGACCACCAAGAACACAGATCAAGTGACTGGTGAAGAAGATACTCCAAGCTCTTCAAATGCTACTTTAACCGCCCCTGATTCCCAACCTAAGATGGAGATGGACTCAATACCATCATCCTCTGGGACAGCAAAGAATAACTTTTTAAAAATTGGTGATAGAGTAAAATTTATAGGTTCAGCTTCTGGTGGGATATATCCAGCAACATCTCCCGCAAGGGGCCCACCCAATGGAACTCGCGGAAAGGTTGTATTAACTTTTGACAACTCTTCATCAAAAATTGGTGTTAAGTTTGATAAACTTATACCTGATGGAGTTGATCTTGGGGGATATTGTGAAGGAGGCTATGGATATTTCTGTTATGATGCTGAGAAGTCTCTTGTTGGAAATTTAGATTCCTATTCTACTTTTAAAAGTAGACTGGAAAAGCTTCCCAACAATGTTATAGTAATTGGCTCTCATACTCATACTGACAACCGCAAGGAGAAGTCGCATCCCGGTGGCTTGCTTTTCACAAAATTTGGCAGCAATCAAACTGCTCTTCTTGACTTGGCATTTCCGGTAATGGATAGTTTTGGAAGACTGCATGATAGAGGGAAGGAAGTTCCAAAAGCAACAAAACTTCTTACTAAACTATTTCCCAACAAAGTTACAATCCACATGCCGCAGGATGAGGGCCTTCTTGTATCATGGAAGCACCAGTTAGAACGAGATGCCGAAACTCTTAAAATGAAGGGAAATCTCAATCAATTGCGCGTTGTTTTGAGTAGGAGTGGAATGGACTGTGAAGGTCTAGAGACATTATGCATCAAGGATCAAACACTTACGAATGAGAGTGCAGAGAAGGTAGTTGGATGGGCCTTAAGCCATCATTTAATGCAGAATCTAGAAGCCGATCCTGATTCTAGAATTCTTTTGTCTTGTGAGAGCATTCAATATGGGATCAGCATCTTACAGGCTATCCTGAATGAATCTAAATGCATGAAGAAGTCACTCAAGGATGTTGTTACAGAGAATGAATTTGAGAAAAGGCTTCTAGCAGACGTTATCCCACCCAGTGATATAGGAGTAACATTTGATGATATTGGAGCTCTTGAAAATGTGAAGGATACTCTAAAGGAGTTGGTGATGCTTCCTTTACAAAGGCCCGAACTTTTCTGCAAGGGACAATTGACAAAGCCATGCAAAGGCATTCTGTTATTTGGTCCACCTGGAACAGGTAAGACGATGCTCGCAAAAGCTGTGGCTACTGAAGCTGGTGCAAATTTTATCAACATTTCCATGTCAAGCATTACATCAAAGTGGTTTGGTGAGGGTGAGAAGTATGTAAAAGCTGTTTTCTCTCTAGCCAGTAAAATTGCCCCAAGTGTTGTATTTGTTGATGAAGTTGACAGCATGCTGGGTCGAAGAGAAAATCCAGGAGAACATGAAGCCATGCGAAAGATGAAAAATGAATTTATGGTGAACTGGGATGGTTTGCGAACAAAGGACACAGAAAGGGTGCTGGTTCTTGCAGCCACAAACAGACCTTTTGATCTTGATGAAGCTGTTATTCGAAGGCTTCCTCGTAGGTTGATGGTGAATTTGCCAGATGCTCCGAACAGAGCAAAGATACTCAAAGTTATTTTGGCAAAAGAAGATTTGTCTCCAGACTTTGATTTTGATTCGGTTGCTACTATGACAGATGGATACTCTGGGAGTGACCTTAAGGAGCGTGCTGCAGCTCTCGCGGATGGCAGGCCTGCTCCTGCCCTTAGTGGAAGTGAAGATATTCGGCCTCTAAATATGAACGACTTCAAATATGCTCATGAACGGGTGTGTGCAAGCGTATCATCGGAGTCTGTAAACATGACCGAGCTGCTACAATGGAACGAGCTCTACGGTGAAGGGGGCTCTAGGAGAAAGAAGGCTCTTAGTTACTTCATGAATGGAGCTGATCATAGTTTTGGTCATCCGCGACTCGTGTTTTGTGGCATCGAGTTCTTTCGAGATTGTCCCGGACGTTCGCCACAGTTTGAAGCGACCGGAGAACTACTAGGAAAACCAAATTCCATGGCGGATCTGATTCCACCACCACATAGATCGACCAACGACTTCTTTTCGGATCCACTTGATTCTCATCCTCTCTGGTTCAAGCCCGACCTATTTCTCTCCCCGAATTTTGATTCCGAATCCTACATATCGGAGCTTCGAACATTTGTCCCATTTGACACCCTCCGATCTCAGCTCCACTCACATCTCTCCGCTCTGAACCGTGAGCTCATTGACTTGATAAATCGTGATTATACCGATTTTGTCAACCTGAGCACAAAGCTTGTCGATGTGGAAGCGGCAGTCGTGCGAATGCGAGCTCCTTTGGTTGAACTCAGGGAGAAAATTGAGCAATTCAGGGCTTCGGTGGAGTTTTCTCTCTCATCTTTGCAGAATGGATTGCGGCAGAGATCAGAGGCAGCTTCGGCCAGAGAGGTCTTAGAATTGTTGCTCGATACGTTTCACGTCGTGTCGAAGGTTGAAAAGCTGATCAAGGAGCTTCCAAGTGCACCTGCTGATGGCTCAAATGGAAATATGAGTTTAACAGATAAAAGTGTATCAAGTAATGGTACTTCTTTGCCTCACATGGAGAACGGAACAAATCTTAGAGAAACACAAAGCATGCTCTTGGAAAGAATTTCCAGTGAAATGAACCGACTGAAATTTTATATCGCTCATGCACAGAATCTTCCCTTCATTCAAAATATGGACAAGAGGATTCAGAGTGCCAGCCTGTTGCTGGACACGAGCTTGGGACATTGTTTTGTTGATGGACTTGAACATCGTGATGAAAATGCTATTTACAATTGCCTACGTGCCTATGCTGCCATTGATAACACCACGAGTGCAGAAGAAATTTTTCGCACTACTGTTGTAGCACCATCAGTTCACAAAGTTATTCCACATGGTGTTTCTGGCATGGATGCTGGATCATCTGATGACGATTTGGAGAATGATTACAAGCAAATGAAGCAATATATTGATAAAGAATGCAAATTTTTGTTAGAAATATCTGCTACAGAAAACTCAGGACTACATGTATTTGATTTCTTGGCTAATTCAATCCTGAAAGAGGTTCTCTCAGCTATCCAAAAGGCAAAACCAGGTGCATTTTCCCCAGGAAGACCTACTGAATTCTTAAGGAACTACAAATCGAGCCTTGATTTCTTGGCATACTTGGAAGGCTATTGTCCATCAAGATCTGCTGTTGCTAAATTTCGAGCTGCAGCTGTGTATAATGAGTTCATGAAGCAATGGAATACTGGGGTTTATTTTTCTCTTAGGTTTCAGGAAATAGCTGGGGCTTTGGATTCGTCCCTTTCAGCACCCAGTCTAACCCCCGTTCAAACTTCATCTTCTGGCCAGGGAGATACTCAGGATCTAACGTTAAAGCAGAGTGTAGTGCTTTTAGACTGCCTGACAGCATGCTGGAGAGAGGACGTTCTCGTCCTTTCTTGTTCTGACAAGTTTCTTCGTCTATCTTTGCAGCTCCTTTCAAGGCGAGTATACTCTAATTGGTTGTCATCTGGTCTAGCTTCCCGTAAGACGGGTACAGGCTCCAATCCAGGTTCTGAATGGGCCGTAGCAGCTGCCCCAGATGATTTAATATATATAATCCATGACCTTGGTCGTCTTGCAACGGTGGTAGCTGGTGAATTCATGGAAACTGTACTTCAGCTCCTGTCATCATGCACCGCGGATGTTCTTGATTCGATAAAGCAGAGCATTTTGTACAGTGGAAAGTCATTGAATAATTTAATGCCCGAAGTTATTGGTGCCATAGTTACTTCACTGGTTGAGAGATCTGTTGAGGACTTGAGACAGCTGAAGGGTATAACAGCAACATACAGGATGACCAATAAACCACTACCTGTAAGGCATTCGCCCTATGTATCAGGGCTGCTACGCCCCCTGAAGGCCTTATTGGATGGAGAGAAAGCGGCAACCTTCTTGACAGCAGAAGCAAGGAATACACTGCTGATCGGTGCTGTGACAGAGATTACGGCACGTTATTACGAACTGGCAGCTGATCTTGTTAGCTTGGCTAGGAAAACAGATTCGTCACTCCAGAAAATCCGACAGGAAGTACAGAGACGAGCTGGAGCAAGCTCAGATGTTTCAGACCATAACATCTCTGACACCGACAAGATTTGCATGCAACTCTTTCTTGATATTCAGGAGTATGGTCGCAACCTGTCAGCCCTTGGGGTTGAAGCGGCGAGCATTCCCACATACCGTTCATTTTGGCAGTGTGTTGCACCTCCAGATAGGCAAAACTCCATCAATTTCTGA 5946 44.16 MVSTRRSGSLSGSNSKRSSSSEDKPSSPKRQKVENGCGSEKSMPVVENSKELCTPPTVDPGDNGPGGGPIAGVDVGEGVSSLKEDAAPAAVAVTTPIAEGTSLVGDKPRSSFSSWSLYAAKQNPNFETTTPWCRLLSQFGQNPNVDIFSSNFTIGSSRGCNFPLKDHTISGTLCKIKHTQREGSAVAVLESTGGKGSVMVNGLTVKKSSSCVLNSGDEVVFGALGNHAYIFQQLMNEVSVKGLDVQSGVGKFLQLGKRTGDPSAVAGASILASLSSLRQDISRWKPPSQTSGKTHQGAELSNSVVHDAMELEIDALEANTNPEVRNDKAVDPSTTSRNLHPGSNSDALIEAGNVKLSGVNDLIGPLFRMLAQSTSCKLKLSKSICKQVMEERNQWIGELQPASTSGMSLRCAAFKEDVHAGIVDGRDLEVSFENFPYYLSENTKNVLIAASYIHLKHKEHSKYASELNTVNPRILLSGPAGSEIYQEMLAKALANYYGAKLLIFDSHSFLGGLSSKEAELLKDGVNAAKSCSCSKQSTVSTETTKNTDQVTGEEDTPSSSNATLTAPDSQPKMEMDSIPSSSGTAKNNFLKIGDRVKFIGSASGGIYPATSPARGPPNGTRGKVVLTFDNSSSKIGVKFDKLIPDGVDLGGYCEGGYGYFCYDAEKSLVGNLDSYSTFKSRLEKLPNNVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPVMDSFGRLHDRGKEVPKATKLLTKLFPNKVTIHMPQDEGLLVSWKHQLERDAETLKMKGNLNQLRVVLSRSGMDCEGLETLCIKDQTLTNESAEKVVGWALSHHLMQNLEADPDSRILLSCESIQYGISILQAILNESKCMKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILAKEDLSPDFDFDSVATMTDGYSGSDLKERAAALADGRPAPALSGSEDIRPLNMNDFKYAHERVCASVSSESVNMTELLQWNELYGEGGSRRKKALSYFMNGADHSFGHPRLVFCGIEFFRDCPGRSPQFEATGELLGKPNSMADLIPPPHRSTNDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLHSHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRAPLVELREKIEQFRASVEFSLSSLQNGLRQRSEAASAREVLELLLDTFHVVSKVEKLIKELPSAPADGSNGNMSLTDKSVSSNGTSLPHMENGTNLRETQSMLLERISSEMNRLKFYIAHAQNLPFIQNMDKRIQSASLLLDTSLGHCFVDGLEHRDENAIYNCLRAYAAIDNTTSAEEIFRTTVVAPSVHKVIPHGVSGMDAGSSDDDLENDYKQMKQYIDKECKFLLEISATENSGLHVFDFLANSILKEVLSAIQKAKPGAFSPGRPTEFLRNYKSSLDFLAYLEGYCPSRSAVAKFRAAAVYNEFMKQWNTGVYFSLRFQEIAGALDSSLSAPSLTPVQTSSSGQGDTQDLTLKQSVVLLDCLTACWREDVLVLSCSDKFLRLSLQLLSRRVYSNWLSSGLASRKTGTGSNPGSEWAVAAAPDDLIYIIHDLGRLATVVAGEFMETVLQLLSSCTADVLDSIKQSILYSGKSLNNLMPEVIGAIVTSLVERSVEDLRQLKGITATYRMTNKPLPVRHSPYVSGLLRPLKALLDGEKAATFLTAEARNTLLIGAVTEITARYYELAADLVSLARKTDSSLQKIRQEVQRRAGASSDVSDHNISDTDKICMQLFLDIQEYGRNLSALGVEAASIPTYRSFWQCVAPPDRQNSINF 1981
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6793733 6814722 - CmaCh13G008010.1 Cma13g00801 306628

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00801 1981 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 77 361 - -
Cma13g00801 1981 Pfam COG (conserved oligomeric Golgi) complex component, COG2 1250 1381 IPR024602 -
Cma13g00801 1981 MobiDBLite consensus disorder prediction 1391 1417 - -
Cma13g00801 1981 CDD FHA 149 232 IPR000253 GO:0005515
Cma13g00801 1981 Gene3D - 1071 1145 - -
Cma13g00801 1981 Gene3D - 131 240 - -
Cma13g00801 1981 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 386 661 - -
Cma13g00801 1981 MobiDBLite consensus disorder prediction 1 21 - -
Cma13g00801 1981 SMART AAA_5 935 1072 IPR003593 -
Cma13g00801 1981 MobiDBLite consensus disorder prediction 326 343 - -
Cma13g00801 1981 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 896 1148 IPR027417 -
Cma13g00801 1981 MobiDBLite consensus disorder prediction 1 76 - -
Cma13g00801 1981 SUPERFAMILY SMAD/FHA domain 131 229 IPR008984 GO:0005515
Cma13g00801 1981 Gene3D - 897 1158 IPR027417 -
Cma13g00801 1981 CDD AAA 937 1070 - -
Cma13g00801 1981 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 386 661 - -
Cma13g00801 1981 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 660 1183 - -
Cma13g00801 1981 MobiDBLite consensus disorder prediction 1387 1417 - -
Cma13g00801 1981 Pfam COG complex component, COG2, C-terminal 1815 1943 IPR024603 -
Cma13g00801 1981 Pfam FHA domain 153 222 IPR000253 GO:0005515
Cma13g00801 1981 Pfam ATPase family associated with various cellular activities (AAA) 939 1068 IPR003959 GO:0005524|GO:0016887
Cma13g00801 1981 ProSitePatterns AAA-protein family signature. 1042 1061 IPR003960 GO:0005524|GO:0016887
Cma13g00801 1981 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 77 361 - -
Cma13g00801 1981 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 660 1183 - -
Cma13g00801 1981 MobiDBLite consensus disorder prediction 536 582 - -
Cma13g00801 1981 MobiDBLite consensus disorder prediction 316 344 - -
Cma13g00801 1981 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 1388 1407 - -
Cma13g00801 1981 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 943 962 - -
Cma13g00801 1981 MobiDBLite consensus disorder prediction 22 36 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00801 - - - csv:101214766 2092.78
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00801 Cma-Chr13:6793733 Cma17g01099 Cma-Chr17:7736117 0 dispersed
Cma08g00498 Cma-Chr8:2826503 Cma13g00801 Cma-Chr13:6793733 1.24E-150 transposed
Cma13g00801 Cma-Chr13:6793733 Cma18g00322 Cma-Chr18:1716278 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g126 . . Bda06g00733 . Bpe12g00487 . . . Cmo13g00832 . . . . . . Cpe20g00310 . . . . . . . . . . . . . . . Cone2ag0968 . . Cone19ag0203 Lsi02g00499 Csa01g00959 . . . Blo15g00077 . . Bpe07g00884 . . . . . . Cma13g00801 . Car13g00649 Car18g00225 . . Bhi08g01473 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002923 2 8 3 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 2 1 1 1 1 4 2 1 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g00801 Cma_Chr13 FPKM 15.84792 18.064674 17.302464 17.500643 24.444201 23.075363 24.468113 21.83532 20.649176 20.937784