Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00805 ATGGAGGTGGAATTGGAAGAGATGTGGAACGATCTCGAATCCCTGAAGCAGTCGCTAACCGATCCGTCTCATCGGGGCCCGGTTGATAAGCTTCAATTGCATTTAGAGCGTCTCACGAATCTTTCGAAGTCAGGACCAGTACGGCGATCAAGAGTTAAGGACATGAGTGCTGAGGTGGTAGATAGCAACCCTTACAGTAGGCTTATGGCTCTTCAGAGGATGGGCATTGTAGAAAACTATGAAAGAATACGGGAGTTTTCAGTTGCCATAGTTGGAATTGGAGGTGTTGGAAGTGTTGCAGCTGAGATGTTAACAAGGTGTGGAATAGGTCGTTTGTTGTTATATGATTATGATAAAGTGGAGCTAGCTAACATGAATAGACTCTTCTTTCGTCCCGAGCAGGTTGGTATGACAAAAACTGATGCTGCAGTGCAGACTCTTGCAGATATAAACCCCGATGTTGTACTTGAGAGCTATACGCTGAACATCACAACTGTACAAGGTTTTGAAACTTGTATGTCAAGTTTGAGAAACAAATCATTTTCCCCTACTAAGGAAGGCAGTGGAGTGGATCTTGTCTTAAGTTGTGTTGATAACTATGAAGCAAGGATGGCTGTTAATCAGGCTTGCAATGAGCTAAATCAGACATGGATGGAATCCGGTGTTTCCGAGGATGCTGTCTCTGGTCATATTCAGTTGCTTATTCCTGGTGAAACCGCCTGTTTTGCTTGTGCACCACCTCTGGTTGTAGCATCTGGCATAGATGAACGAACACTCAAACGAGAAGGGGTTTGTGCTGCATCTTTACCTACAACAATGGGAGTTGTTGCAGGCCTATTGGTGCAAAACACCCTCAAGTTCCTGCTAAAATTTGGGCATGTTTCTCCTTACTTGGGATATAATTCTCTAAAAGACTTCTTCCCGACCATGGAAATGAGGCCCAATCCTCAGTGTTCAAATGTGGTTTGTCTGGAAAGACAGAAGGAATACGTTATTGCAAAACCTGCACGTGATGCTGCAGCTAAGGCAAAGATGGAAGCAGAAGCATTGACGGTTGAAGAAATCCCACTGCATGCTGATAATGAATGGAACATAAGTGTTGTTGATGAAGTTGAGATTGAAATCGAGGGAGCAACCACTTCAGATGCCCTTCCTGAAGGTCTTGTTCGTGAGCTTCCAATTGCAGATGAGTCGCAGCATCCGGCTCCCACAGAATCCGCAGCCCCTTCTTCAGATGATCTTGAAGATCTGAGGAGACAACTTGAGGCCCTTAATTCTTGA 1281 44.73 MEVELEEMWNDLESLKQSLTDPSHRGPVDKLQLHLERLTNLSKSGPVRRSRVKDMSAEVVDSNPYSRLMALQRMGIVENYERIREFSVAIVGIGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESYTLNITTVQGFETCMSSLRNKSFSPTKEGSGVDLVLSCVDNYEARMAVNQACNELNQTWMESGVSEDAVSGHIQLLIPGETACFACAPPLVVASGIDERTLKREGVCAASLPTTMGVVAGLLVQNTLKFLLKFGHVSPYLGYNSLKDFFPTMEMRPNPQCSNVVCLERQKEYVIAKPARDAAAKAKMEAEALTVEEIPLHADNEWNISVVDEVEIEIEGATTSDALPEGLVRELPIADESQHPAPTESAAPSSDDLEDLRRQLEALNS 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6838153 6846095 + CmaCh13G008050.1 Cma13g00805 306632

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00805 426 MobiDBLite consensus disorder prediction 391 426 - -
Cma13g00805 426 CDD ThiF_MoeB_HesA_family 64 312 - -
Cma13g00805 426 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 88 116 IPR029752 -
Cma13g00805 426 PANTHER UBIQUITIN-ACTIVATING ENZYME E1 1 425 IPR045886 -
Cma13g00805 426 Pfam ThiF family 65 319 IPR000594 -
Cma13g00805 426 Gene3D - 82 344 - -
Cma13g00805 426 PANTHER BNAANNG16230D PROTEIN 1 425 - -
Cma13g00805 426 SUPERFAMILY Activating enzymes of the ubiquitin-like proteins 60 322 IPR035985 GO:0008641
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00805 K12164 UBA5, UBE1DC1; ubiquitin-like modifier-activating enzyme 5 - csv:101204069 761.911
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma13g00805 Cma18g00317 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00805 Cma-Chr13:6838153 Cma20g00825 Cma-Chr20:3926872 3.19E-14 dispersed
Cma06g01661 Cma-Chr6:10270420 Cma13g00805 Cma-Chr13:6838153 1.46E-11 transposed
Cma13g00805 Cma-Chr13:6838153 Cma18g00317 Cma-Chr18:1683788 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g108 . Blo16g00267 . . . Bpe13g00202 Bma06g00258 . Cmo13g00837 Cmo18g00219 . . . . . Cpe20g00306 . . . . . . . . . . . . . . . Cone2ag0976 . . . Lsi02g00504 Csa01g00965 Chy12g01168 Cme12g01590 . . Bda11g01600 . . . . . Sed08g2435 . . Cma13g00805 Cma18g00317 Car13g00653 Car18g00230 Cpe09g00960 . Bhi08g01488 Tan05g2965 Cmetu12g0210 Lac10g0584 Hepe07g2110 . . Cla03g00354 Cam03g0373 Cec03g0360 Cco03g0376 Clacu03g0372 Cmu03g0978 Cre03g0670 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009587 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g00805 Cma_Chr13 FPKM 18.087311 17.765057 23.088312 23.657333 16.261734 17.05578 17.439098 16.768473 19.422262 19.590773