Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00814 ATGAACGACGACATTCTTCACAACATCTTCCGCAGGCTTCCGGCTCGATCCTTCGCAGCGGCGGCCTGCGTTTCCAAAACATGGAACTCTACTTGCAATCGGATCCTCCGTCGCCCGAAATTCGCCTCCGCCGTGTCCTTGAATCCCTCTCTTCACGTGGCGGTGGAGGAGGTTGTTCATAAGGTTCTGTCGGAGCCGATTCGGCCGCAGTTCGCCATTGCCTCCAGAGGCATCATCGGCGTAGACGCGTTAACCGATGAAATCAAGGAGGTGAAATGGGAATTAGCGGGTGATTATGATATTGAAACTCAAGATTACAACTCGATCTTCAATCGAAACAGAGGAATCGTTTTGGCCGTTGGATTTCTGCCCGGATTTAAAGTTGATGCAATCTCACTCCTCCGTTCAATTAGGGTGACTGAAGAAGCTATGGCGGATAAGTTCGTAACGGATATAAGGGACCATACGGCCTCTGTTTCTGACTTCACCTCTCCTTACTGCATTATACTGTTTGGAGATCAACACGAGGACATGAAACCCATCATCGCAAAGCTAGATTCAGCTATGGCCGAAGAAACAGTGATTGTGGGCGATGCCTGTGGCTGCTTCTTGAGTAAAAGTAGAAGAACAAGCAACGAAATTCATGGGTTTTCACTTGGTGCTGTAGCTTTAGTAATTGCAAGGGACAAGAACAACCCAGAATGTGTAGGAGAAACCATTTTCCATTTCACATCATCCACTGGAACAATCCCTTTTGGTCTTGAATTGAAAGCCGTTTCCACCAGCGTCAGAGGCTCCAAATTCACATGGCTCTCTGCTTTCATGGAAGGAGACAACGAAATCCTTCATGGACAGAGCATTCTAAAGGATCTTCAAGAAGAGATCGAATACGACGATTTGGAAACCGATATGTTCATCGGAGTAACGCAAAATCGAAAACAGAGCATCGGTTCACAAAGCTTGGGGCCCTCAAAATCCTTGGATATGTATAAAGTTTTAGGGGGAGACCAGCAGTATTTTGTGGTGGACGGCGTCGGAATCCGGCCAGGCGATTCCATCTTATTCTACCATTCTGATTCAGAAACTGCGTCCTCTTCATCCAACATTGCATTTGAAGATCTTACAACTCTAAACCCACCACCCAAAACCAATGCCCCCGCAAGCTCTGTGTTTGCCGCCGGTAAAAGTGCAGTTTTTGGATGCCTTATATTCTCCTGCCATTCTCGAGGACAGGCGTATTTTGGACGTCCCAATGTTAATTCGTCGCCGTTTAGTTTGAATTTCCCCGGTGTCCCGTTTTCCGGGATGTTTTGTGCCGGGGAAATTGGTCGGGCCGTTTCGAGGTCGATTCGGGACGAGGAAGAGGTAGATGAGGATGATTCTGTTCGCCGTTTTCTGCATGTTTATAGCACTGTTTATTTGGTTCTGTCTCATATTAATGGCGGAGGAGAAGGTAGAAGATGA 1464 47.27 MNDDILHNIFRRLPARSFAAAACVSKTWNSTCNRILRRPKFASAVSLNPSLHVAVEEVVHKVLSEPIRPQFAIASRGIIGVDALTDEIKEVKWELAGDYDIETQDYNSIFNRNRGIVLAVGFLPGFKVDAISLLRSIRVTEEAMADKFVTDIRDHTASVSDFTSPYCIILFGDQHEDMKPIIAKLDSAMAEETVIVGDACGCFLSKSRRTSNEIHGFSLGAVALVIARDKNNPECVGETIFHFTSSTGTIPFGLELKAVSTSVRGSKFTWLSAFMEGDNEILHGQSILKDLQEEIEYDDLETDMFIGVTQNRKQSIGSQSLGPSKSLDMYKVLGGDQQYFVVDGVGIRPGDSILFYHSDSETASSSSNIAFEDLTTLNPPPKTNAPASSVFAAGKSAVFGCLIFSCHSRGQAYFGRPNVNSSPFSLNFPGVPFSGMFCAGEIGRAVSRSIRDEEEVDEDDSVRRFLHVYSTVYLVLSHINGGGEGRR 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6867175 6869854 - CmaCh13G008140.1 Cma13g00814 306641

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00814 487 SUPERFAMILY F-box domain 3 34 IPR036047 GO:0005515
Cma13g00814 487 SMART fbox_2 1 41 IPR001810 GO:0005515
Cma13g00814 487 Pfam F-box domain 3 37 IPR001810 GO:0005515
Cma13g00814 487 Gene3D - 1 38 - -
Cma13g00814 487 SMART FIST_C_2 287 445 IPR019494 -
Cma13g00814 487 Pfam FIST C domain 346 444 IPR019494 -
Cma13g00814 487 PANTHER F-BOX ONLY PROTEIN 22 74 479 - -
Cma13g00814 487 PANTHER F-BOX ONLY PROTEIN 22 2 77 - -
Cma13g00814 487 PANTHER SKP2-LIKE, FIST C DOMAIN, FIST DOMAIN, N-TERMINAL ISOFORM 1 74 479 - -
Cma13g00814 487 PANTHER SKP2-LIKE, FIST C DOMAIN, FIST DOMAIN, N-TERMINAL ISOFORM 1 2 77 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00814 - - - cmax:111495385 937.562
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma13g00814 Cma18g00311 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00814 Cma-Chr13:6867175 Cma18g00311 Cma-Chr18:1659344 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g96 . . . . . . . . Cmo13g00844 Cmo18g00225 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma13g00814 Cma18g00311 . Car18g00236 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014082 0 0 0 0 0 0 2 1 1 0 1 1 2 0 0 2 1 3 2 1 0 1 0 1 1 0 1 1 1 1 24
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g00814 Cma_Chr13 FPKM 0.0 0.0 0.0 0.529499 0.0 0.450153 0.417469 0.0 0.0 0.0