Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00826 ATGGGTTGCGTTCTTGGCAGACAAGCCGCCGACGGTCGCCGGAGCGCATCCGGACCTACTCGTCGCCGCCGGAGTACGGATCACCACTCTCATATCGATGGAGTTAATAGTGAGAGAGTTAAGAAACAAACGACTACAGCGGAAAACCAGGGAGTTCGGCAGGACGTGGATTCCTTGTCCGTAGAGCGTCGGAGGCCTTCATCAGGCATTTTCCAGAGAAATGAGCAAGGTTGGCCGTCGTGGCTTCTTGCGGTAGCCGGCGAGGTGATCCAAGGATGGACGCCTCGTCGAGCCAATACGTTTGAGAAGCTTGCTAAGATTGGGCAAGGGACGTATAGCAATGTGTACAAGGCGAGGGATCTTATTACTGGGAAAATTGTTGCTCTGAAGAAGGTTAGGTTTGATAATTTAGAACCAGAGAGCGTCAGGTTTATGGCCAGAGAGATTTTGGTCCTGAAATGCCTCGATCATCCCAATGTGCTTAAGCTTGAAGGCTTAGTTACTTCAAGAATGTCGTGTAGTCTTTACTTAGTGTTCGAGTATATGGAACACGACCTCGCCGGACTTGCTGCCGGTCAAGGAGTCAAGTTCACGGAGCCTCAGGTCAAATGCTACATGAAGCAACTATTGTCCGGGCTTGAGCACTGTCACAACCGAGGTGTTTTGCATCGTGATATAAAGGGTTCCAATTTGCTAATTGATAACGAAGGAGTACTGAAAATAGCTGATTTTGGGTTAGCTACTTTCTTTGATCCTGAGCAGAAGCAAAATATGACTAGTCGAGTTGTAACGCTTTGGTACCGCCCACCTGAACTATTGCTTGGAGCTACTCTTTATGGTATAGGGGTTGACCTTTGGAGTGCTGGCTGCATCTTGGCCGAGCTGCTTGCTGGGAGGCCAATCATGCCAGGAAGGACAGAGGTCGAACAACTTCATAAGATATTTAAATTATGTGGTTCTCCATCTGAGGATTACTGGAAGAAGTACAAATTGCCAAATGCAACTCTATTTAAACCCCAGCAACCATACAAACGCTGCATTGTGGAAACGTTCGAAGATTTTCCATCTTCGTCTCTACCCCTTATCGAATCTCTCCTTACAATGGACCCTGACGGGCGAGGTACTGCCACTGCTGCTCTGAATAGCGAATTCTTTACAACCGAGCCTCTTGCTTGTGAACCATCAAGTCTGCCTAAATATCCTCCTAGCAAAGAATTGGATGTAAAATTGAGAGACGAAGAAGCTAGAAGGCAAAGAGGTCTAAGTGGGAAAGCAACAGCTGCTGATGGTGGTGGCAGGAGAGTAAGAGTACGCGATCGAGTTGGTCGGGCTGTCCCAGCTCCTGAAGCCAATGCAGAGATGCAATCAAACTTGGATAGGTGGAGAAATGTGACAAAAGCAAATGGTAAGAGCAAGAGCGAGAAGTTCCCCCCGCCTCATCAAGATGGGGCAGTGGGGTACCCGCCACATGAGACATCCCAGAGGAGCCATTTTTCATTTGGTGCAGCTGGTACTTCCTTCAGCTCCTCAATTTTTAATTCAAAATCTGGATCTGTGAAAAGTACAGGAGCTCCTGGGGGGCCCTCTCGGAGGAAGAAAGCGGATAAAGATAACCCATCAGTGTCTTCATCAGGAAAATTCATCCGTGCACTGAAGCCATCAATCGGGTTATCAATGGATCTTTTGTTTAGAGGTAAATAG 1701 47.8 MGCVLGRQAADGRRSASGPTRRRRSTDHHSHIDGVNSERVKKQTTTAENQGVRQDVDSLSVERRRPSSGIFQRNEQGWPSWLLAVAGEVIQGWTPRRANTFEKLAKIGQGTYSNVYKARDLITGKIVALKKVRFDNLEPESVRFMAREILVLKCLDHPNVLKLEGLVTSRMSCSLYLVFEYMEHDLAGLAAGQGVKFTEPQVKCYMKQLLSGLEHCHNRGVLHRDIKGSNLLIDNEGVLKIADFGLATFFDPEQKQNMTSRVVTLWYRPPELLLGATLYGIGVDLWSAGCILAELLAGRPIMPGRTEVEQLHKIFKLCGSPSEDYWKKYKLPNATLFKPQQPYKRCIVETFEDFPSSSLPLIESLLTMDPDGRGTATAALNSEFFTTEPLACEPSSLPKYPPSKELDVKLRDEEARRQRGLSGKATAADGGGRRVRVRDRVGRAVPAPEANAEMQSNLDRWRNVTKANGKSKSEKFPPPHQDGAVGYPPHETSQRSHFSFGAAGTSFSSSIFNSKSGSVKSTGAPGGPSRRKKADKDNPSVSSSGKFIRALKPSIGLSMDLLFRGK 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6918269 6922344 - CmaCh13G008260.1 Cma13g00826 306653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00826 566 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 66 529 - -
Cma13g00826 566 Gene3D Phosphorylase Kinase; domain 1 88 183 - -
Cma13g00826 566 MobiDBLite consensus disorder prediction 16 38 - -
Cma13g00826 566 MobiDBLite consensus disorder prediction 512 546 - -
Cma13g00826 566 CDD STKc_CDK9_like 101 385 - -
Cma13g00826 566 SUPERFAMILY Protein kinase-like (PK-like) 94 390 IPR011009 -
Cma13g00826 566 PANTHER CELL DIVISION PROTEIN KINASE 66 529 - -
Cma13g00826 566 MobiDBLite consensus disorder prediction 1 68 - -
Cma13g00826 566 MobiDBLite consensus disorder prediction 39 56 - -
Cma13g00826 566 SMART serkin_6 101 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00826 566 Pfam Protein kinase domain 101 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00826 566 ProSitePatterns Serine/Threonine protein kinases active-site signature. 221 233 IPR008271 GO:0004672|GO:0006468
Cma13g00826 566 MobiDBLite consensus disorder prediction 415 497 - -
Cma13g00826 566 ProSiteProfiles Protein kinase domain profile. 101 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00826 566 Gene3D Transferase(Phosphotransferase) domain 1 184 424 - -
Cma13g00826 566 ProSitePatterns Protein kinases ATP-binding region signature. 107 130 IPR017441 GO:0005524
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma13g00826 Cma18g00299 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01464 Cma-Chr6:9351664 Cma13g00826 Cma-Chr13:6918269 0 dispersed
Cma13g00826 Cma-Chr13:6918269 Cma14g01644 Cma-Chr14:12296897 0 dispersed
Cma13g00826 Cma-Chr13:6918269 Cma18g00299 Cma-Chr18:1596685 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69019 PF00069 Pkinase 3.10E-67 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00826 K08819 - csv:101205716 982.63