Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00828 ATGGCAGCCTTTTCATATCAATACCAACCGGTTCTTCTCGACTCCATGTTCTTCCCCAACAATTCCTACAAAATGGGAGGCTTTTTGGATGACCCAAATTTCAACACCAATTGCTTCTCTCAATTTCAAGAAGAACAACAACAACCCATTTACCATTTCCCCGACATCTCCAACCAAACCCCTGAATCTTCCACTTTGGTCGACAGATCCGACAGCGCCGACCCGCCGGCTGTCACTGTCACCGTCACTTCCCCTTGTAGTAAGAAAAGAAAGAGCCGGAATACTTCCTCCGCCACCTCCGCCCATTCCAAGGGCACTACAGAGACCACCGCAAAGAAGCAGAAAAGTAAAGTGGAATTAGATGAACATAAAGAAGGAGATCCAAAGCCCAAAAATGGGAAGAAAGAGGAGAAAAAAGCTTCAGAAGAAGACGGTGCTGCAACCAAAGGCTACATTCACGTCAGAGCTCGAAGGGGCCAAGCTACTGACAGCCACAGTCTAGCGGAGAGGGTGAGAAGAGAGAAGATTAGTGAAAGGATGAAGACATTGCAACGCCTTGTTCCTGGTTGCGACAAGGTTACAGGGAAGGCCCTGATGTTGGATGAAATTATAAATTATGTTCAGTCCCTACAAAATCAAGTTGAGTTTCTCTCCATGAAACTCGCTTCTTTGAACCCAATTTTCTTCGACTTCAGAATGGATTTGGACGGCCTTATGATTCAACCAGAGACGCCGTCGTTGAGTAGTATAACGCCACAACTTCCGGTGATCGACACCACCCCAACTCCGGCAATCTCCGCCCCAAATAACTTTCCCCTAATGGACCCTTCAGCTAATAGCATGTTTCTACTCCAACCAGGGATGAGCCCGGCCGCCTACTCCCCGTCATCTCAGGATTACGTTAAAGTTTCATCATGGGATGTGGAAGAACAGAAACGAAAGCTTCTAATTTCATCGGGGATTGGCGACAACTTGTGTTACTTCCATTGA 990 46.97 MAAFSYQYQPVLLDSMFFPNNSYKMGGFLDDPNFNTNCFSQFQEEQQQPIYHFPDISNQTPESSTLVDRSDSADPPAVTVTVTSPCSKKRKSRNTSSATSAHSKGTTETTAKKQKSKVELDEHKEGDPKPKNGKKEEKKASEEDGAATKGYIHVRARRGQATDSHSLAERVRREKISERMKTLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASLNPIFFDFRMDLDGLMIQPETPSLSSITPQLPVIDTTPTPAISAPNNFPLMDPSANSMFLLQPGMSPAAYSPSSQDYVKVSSWDVEEQKRKLLISSGIGDNLCYFH 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6927496 6929598 - CmaCh13G008280.1 Cma13g00828 306655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00828 329 MobiDBLite consensus disorder prediction 54 107 - -
Cma13g00828 329 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 158 226 IPR036638 GO:0046983
Cma13g00828 329 MobiDBLite consensus disorder prediction 108 168 - -
Cma13g00828 329 Pfam Helix-loop-helix DNA-binding domain 164 211 IPR011598 GO:0046983
Cma13g00828 329 Gene3D - 157 227 IPR036638 GO:0046983
Cma13g00828 329 CDD bHLH_AtBPE_like 150 235 - -
Cma13g00828 329 SMART finulus 166 216 IPR011598 GO:0046983
Cma13g00828 329 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 329 IPR024097 GO:0006355
Cma13g00828 329 MobiDBLite consensus disorder prediction 54 168 - -
Cma13g00828 329 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 160 210 IPR011598 GO:0046983
Cma13g00828 329 PANTHER BASIC HELIX LOOP HELIX PROTEIN BHLH8 1 329 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00029 Cma13g00828 CCT
Cma13g00828 Cma18g00297 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00828 Cma-Chr13:6927496 Cma08g00243 Cma-Chr8:1373639 3.89E-46 dispersed
Cma10g00029 Cma-Chr10:106370 Cma13g00828 Cma-Chr13:6927496 5.71E-44 wgd
Cma13g00828 Cma-Chr13:6927496 Cma18g00297 Cma-Chr18:1577245 6.27E-152 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36121 PF00010 HLH 6.20E-07 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00828 - K18878 cmax:111495225 628.246