Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00832 ATGGGTTCCAGTTCCGATTCCTATTCGAACAATGATGATAACAACGCAGTAGGATGGAACAGAGCTGGGGGTTTGATTATGAAGACTTTGGTACTGTTTGGTGGTGCCCTTTTGCTTAAACGCCTCACTAAGTCCACAACGCGATGGGATCATGCCCGCTTCGTTTCTCAGTCCCTTTCTGGCGAGAAGTTTTCCAAGGAGCAAGCAGCTAGGGATCCTGAAAATTACTTCAATATCAGAATGGTTACGTGCCCTGCAGCAGAAATGGTCGATGGTTCTACGGTATTATACTTTGAACAAGCATTCTCCAGAACTCCTCAAAAACCCTTTCGCCAGAGATTTTATACGGTGAAGCCTTGTTCAAAAGAGATGAAATGTGATGTGGAGTTAAGCTCATACGCTATTCGGGAAATGGAGGAGTACAAGAATTTTTGTGATCGGACAAAAGATCAATGTCCTCTTCCCGAAGAAATTGTTGGGGACATTGCAGAGCATTTAACTACCTTACATCTTAAGCGTTGTGATCGTGGAAAACGTTGCTTGTATGAAGGTTCTACTCCACCAGGCAGTTTTCCAAATTCATGGAATGGAGCAGCCTACTGTACTTCTGAATTATCTATCCTAAAGAATAATGAAGTACATACGTGGGAAAGGGGTTACGACGAAGATGGAAACCAGGTTTGGGGAACAAAAGAAGGACCTTACGAATTCAAGGCAGTTCCAGCCAACAGTCTCAAGGACATGTTTTCTCCATTAAATTTCTCTCAGCAGTCCATGGAGAAAAGAATAGAGGGCTCATTTGTCTTGCAATAA 813 43.05 MGSSSDSYSNNDDNNAVGWNRAGGLIMKTLVLFGGALLLKRLTKSTTRWDHARFVSQSLSGEKFSKEQAARDPENYFNIRMVTCPAAEMVDGSTVLYFEQAFSRTPQKPFRQRFYTVKPCSKEMKCDVELSSYAIREMEEYKNFCDRTKDQCPLPEEIVGDIAEHLTTLHLKRCDRGKRCLYEGSTPPGSFPNSWNGAAYCTSELSILKNNEVHTWERGYDEDGNQVWGTKEGPYEFKAVPANSLKDMFSPLNFSQQSMEKRIEGSFVLQ 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6955499 6959277 - CmaCh13G008320.1 Cma13g00832 306659

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00832 270 PANTHER BNAA01G14430D PROTEIN 11 270 - -
Cma13g00832 270 PANTHER CHROMOPHORE LYASE CRL, CHLOROPLASTIC 11 270 IPR010404 GO:0016829|GO:0017009
Cma13g00832 270 CDD CpcT 55 238 IPR010404 GO:0016829|GO:0017009
Cma13g00832 270 Gene3D CpcT/CpeT domain 50 247 IPR038672 -
Cma13g00832 270 Pfam CpeT/CpcT family (DUF1001) 56 238 IPR010404 GO:0016829|GO:0017009
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00832 - - - csv:101207303 511.916
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00832 Cma-Chr13:6955499 Cma18g00291 Cma-Chr18:1544490 1.97E-170 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g5 . . . Bda15g00749 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma13g00832 . . . . . . . . . . . . Cla03g00382 Cam03g0401 Cec03g0387 Cco03g0402 Clacu03g0400 Cmu03g1005 Cre03g0697 . . . .
Vvi17g6 . . . . . . . . Cmo13g00861 Cmo18g00240 . . . . . Cpe20g00287 . . . . . . . . . . . . . . . . . Cone13ag0271 Cone19ag0255 Lsi02g00530 Csa01g00993 Chy12g01141 Cme12g01559 . . . . . . . . Sed08g2406 . . Cma13g00832 . Car13g00675 Car18g00252 Cpe09g00940 . Bhi08g01543 Tan05g3015 Cmetu12g0056 Lac10g0616 Hepe07g2079 . . Cla03g00382 Cam03g0401 Cec03g0387 Cco03g0402 Clacu03g0400 Cmu03g1005 Cre03g0697 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007065 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g00832 Cma_Chr13 FPKM 13.328473 12.277984 27.176655 30.922451 16.182232 13.20054 15.972088 24.271074 23.630913 22.237999