Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00843 ATGAATTTCAGTCACAGCATGGACATTACTCTTCACTCCTCCATGCCTCTCCCCTTCGCCTACAATTTCTCGCCCTCCAATTGCGCCATTCTCTCCGGCTGTTCCACTGCCTCTTCTTCTTCTTCGTCTTCTTCCAATGCCGGACTTCTGTCCGGCCCCATCATGGATACCAGAATATGGAGTAAACTTCCGCAGAAGCTGCTGGACCGGGTGGTCGCGTTTCTTCCGCCGCCGGCCTTCTTTCGTGCCCGTTGCGTCTGCAAGAGATGGTACGGCCTTCTCTTTTACGCTACCTTCCTCGAAACCTACCTCCAACTCTCCCCTCATCGCCGCCACTGGTTCCTGTTCTTCAAGCTCAAAGGCCTTTCCAGCCACATTTACAGGAATAATACTAACTCCCCACTTGGAGGACCCGCCTCCAGACCCACCTACGAGGGGTACCTGTTTGATCCATACGACGTGGCATGGTACCGGCTGTCGTTCGCTCAAATTCCGGCGGGGTTCTCACCGGTGGCCTCCTCCGGCGGGCTAATCTGTTGGGCACCGGACGAGGGAGGCCCCAAAAGTCTAATCCTGTCGAACCCAATTCTAGGCACCTTATCTCAGCTGCCCCCGACAGTAAGACCACGCCTATTCCCTTCAATCGGCCTCGCCATAACCCCATCGTCCATAGACGTGACGGTGGCCGGAGACGACCTAATATCCCCTTACGCCGTGAAAAATCTCACGGCAGAAACCTTCCACATAGACAGCGGCGGATTCTACTCAATGTGGGCCACCACCTCAGCTCTGCCACGTCTATGCAGCTTCGAATCAAATCGAATGATCCACGTGGAAGGAAGATTGTACTGCATGAACTACAGCCCATTCAGCATCCTTGCATACGACATGTCGCAAAACAAGTGGTGGAAAATCCAAGCACCAATGAGGCGGTTTCTACGGTCGCCAAACCTGGTGGAGAGCCGGGGGAAACTGCTGTTGATGGCGGCGGTGGAGAAGAGCAAATTGAACATACCGAAGAGCCTGCGGGTATGGGGGCTGCAAGGTTGCGGAACGACGTGGATAGAAATGGAGCGAATGCCGCAGCAATTGTACGTGCAGTTCGAGGAAATGGAAAAAGGGTGTGGGTTTGAATGCGTGGCGCATGGGGAATTCATGGTGGTTTTAATTAAAGGGTGTTGGGATAAGGCGGCGCTCTTGTATGACATGTCCAAGAAACTCTGGCAGTGGATTCCGCCGTGTCCCTATATCGGAAGCGGCGGCGGAGAAGAGAAAAGGGATTTTCATCTAAGCCTAAACCACTCGCACTTTCAAGACCTCAGAAGTCTACGCCCTGTCGGTTGGGTTTGGGTAATGGCTCCGACAGAGGTGAAAACGCTGTATCTGCAATTTCTTCCACTTCTGACGTTAATTTGGGTGTCCAGAATGAGCGCCTCGGACACTATGTTCAACGACTCAGTAAGTGGGCATTCGGTTGTTTCCCGAAATGAAAACCCAAAAGGACGGTGCCCACATGGTTGGTTTATTAGCCCAAACAGGACTAAGTGCTACGGTTTTATGTTGAGCCCTAAATCATGGAATGAATCAGAGAACCAATGTAATGGTTTAGGCGGGAACTTGGCATCTCTGATAACATATCAAGAGTTCAGCTTTGCACAAAACATGTGTAACGGAACTTTTGGTGGTTGTTGGGTTGGTGGCAGAGTGTTCAACTCTTCAAATAATCTTGTTTGGAATTGGTCAGATAATGTTTCTAAATGGAACGATTCCATTATTCCCAGCACAGCTTCACAATCTAATTGCAAAAATGTCTCTTGCCGCATGAATGTTTTGATTGAAACATGTGCTTTGATAGTTGGTGGACTAGCAGCACCCTTCCTTAGGGATGAGAAATGCAACAGTTCTCACCCTTTTATATGCATGATAAATCTAGATGATAGATGCCAGCGCATGCACTGCCACAAGGAGTATCTAGTTATTCTAGCTGTTGTGAGTGGGTTGATATTTTGCACGACGTTTGCTGTTGTGATTTGGCTTCTTGCCTACAAGAGGAGCAAAAAACGGAGAAGGTCTCGGAAGGTATCCAATCCTGCAGCTTCTGCACTGGTACCACCTTCATGGAAGGTGTTTACCAAGGAAGAGCTGAGATCTATTACAAAAAACTTCAGTGAGGGAAACTGTCTTCTTGGAGACACAAAAACAGGTGGTACATACAGTGGACTCTTACCCGATGGTTCAAGAGTTGCAATTAAAAGATTAAATCATTCTGAAATTGCAAGAGTTGCTAGACTTCGTCACCCAAATTTGGTTGCCCTGAAAGGATGCTGCTATAACCATGGTGACCGGTACATTGTTTATGGATTTGTTGTTAATGGACCCTTAGATTGA 2388 48.87 MNFSHSMDITLHSSMPLPFAYNFSPSNCAILSGCSTASSSSSSSSNAGLLSGPIMDTRIWSKLPQKLLDRVVAFLPPPAFFRARCVCKRWYGLLFYATFLETYLQLSPHRRHWFLFFKLKGLSSHIYRNNTNSPLGGPASRPTYEGYLFDPYDVAWYRLSFAQIPAGFSPVASSGGLICWAPDEGGPKSLILSNPILGTLSQLPPTVRPRLFPSIGLAITPSSIDVTVAGDDLISPYAVKNLTAETFHIDSGGFYSMWATTSALPRLCSFESNRMIHVEGRLYCMNYSPFSILAYDMSQNKWWKIQAPMRRFLRSPNLVESRGKLLLMAAVEKSKLNIPKSLRVWGLQGCGTTWIEMERMPQQLYVQFEEMEKGCGFECVAHGEFMVVLIKGCWDKAALLYDMSKKLWQWIPPCPYIGSGGGEEKRDFHLSLNHSHFQDLRSLRPVGWVWVMAPTEVKTLYLQFLPLLTLIWVSRMSASDTMFNDSVSGHSVVSRNENPKGRCPHGWFISPNRTKCYGFMLSPKSWNESENQCNGLGGNLASLITYQEFSFAQNMCNGTFGGCWVGGRVFNSSNNLVWNWSDNVSKWNDSIIPSTASQSNCKNVSCRMNVLIETCALIVGGLAAPFLRDEKCNSSHPFICMINLDDRCQRMHCHKEYLVILAVVSGLIFCTTFAVVIWLLAYKRSKKRRRSRKVSNPAASALVPPSWKVFTKEELRSITKNFSEGNCLLGDTKTGGTYSGLLPDGSRVAIKRLNHSEIARVARLRHPNLVALKGCCYNHGDRYIVYGFVVNGPLD 795
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6992954 6998071 + CmaCh13G008430.1 Cma13g00843 306670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00843 795 SUPERFAMILY Protein kinase-like (PK-like) 690 794 IPR011009 -
Cma13g00843 795 Pfam Lectin C-type domain 523 641 IPR001304 -
Cma13g00843 795 SUPERFAMILY Kelch motif 136 416 IPR015915 GO:0005515
Cma13g00843 795 ProSiteProfiles F-box domain profile. 57 106 IPR001810 GO:0005515
Cma13g00843 795 SUPERFAMILY F-box domain 53 121 IPR036047 GO:0005515
Cma13g00843 795 CDD CLECT 515 640 - -
Cma13g00843 795 Gene3D Phosphorylase Kinase; domain 1 681 788 - -
Cma13g00843 795 PANTHER - 456 795 - -
Cma13g00843 795 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 456 795 - -
Cma13g00843 795 SMART CLECT_2 503 641 IPR001304 -
Cma13g00843 795 ProSiteProfiles C-type lectin domain profile. 512 641 IPR001304 -
Cma13g00843 795 SMART fbox_2 63 103 IPR001810 GO:0005515
Cma13g00843 795 Pfam F-box domain 60 91 IPR001810 GO:0005515
Cma13g00843 795 Gene3D - 56 100 - -
Cma13g00843 795 Gene3D - 486 644 IPR016186 -
Cma13g00843 795 SUPERFAMILY C-type lectin-like 487 644 IPR016187 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00182 Cma-Chr8:1021694 Cma13g00843 Cma-Chr13:6992954 8.11E-24 dispersed
Cma13g00843 Cma-Chr13:6992954 Cma15g00216 Cma-Chr15:1064094 3.31E-27 dispersed
Cma14g01341 Cma-Chr14:10460631 Cma13g00843 Cma-Chr13:6992954 7.93E-16 transposed
Cma13g00843 Cma-Chr13:6992954 Cma18g00286 Cma-Chr18:1517592 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00843 - - csv:101204667 748.814