Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00853 ATGGCGTCAGGACGCAAGGCTGTTGAGGATACTGACGATAGAGATAGTAGTATCTGGGTTTTGGATCAGCAGTTGGACCAGCCAATGGAGGAGGAGGCTAGGCGGATAAGAAATGCGTATCAGGAAAAGGAACATTCTGTATTTAAAATTCTACAACTTGCATTCCAAAGCCTTGGGATAGTCTACGGAGATTTGGGCACTTCCCCTTTATATGTCTTCTATAACACGTTCCCCGATGGAGTTGAAAATACAGAGGACTTGATAGGAGCTCTTTCATTGATTATATACTCTCTAACTCTCATTCCCCTTATCAAGTACGTGTTTATTGTCTGCAAGGCAAATGACGATGGTCAAGGTGGGACATTTGCTCTATATTCATTACTATGCCGTCATGCTAAAATAGGAACTATCCCTAACCATGACCACAGTGATGAGAAGCTTACAACTTATAGTTGTTCCAAGTACCGTGAACAATCATTTGCTGCAAAAACTAAGAGATGGCTGGAAGGAAATCGTGTTAAGAAACACGCAATTCTTGTTCTCGTTCTTGTTGGCTCTTGCATGGTGATTGGGGATGGGATTTTAACACCTGCTATTTCAGTTCTTTCTGCTGTTGGGGGGATCAATGTTGGTCGTACAAAAATAAGCAATGATGTAGCTGTTCTTGTTGCTATTGTCATACTTATTTTCTTGTTTACCATGCAACGTTATGGCACAGATAAAGTTGGTTGGCTTTTTGCCCCGGTAGTTTTTCTGTGGTTCATCTTAATAGGAGGCATCGGCATTTATAACATCTGTAAGTATGATAACAGTGTCCTTAGAGCCTTTTCTCCAGTATATATATATCGGTACTTCAAAAGGGGAGGGAAAGTTGGATGGATATCCCTTGGAGGGATCATGCTTAGTATTACAGGAACTGAAGCACTTTTTGCAGACCTATCCCATTTTCCAGTTTCCTCCATACAAATTGCTTTTACAGTTGTTGTATTTCCTTGCCTTCTTTTAGCCTACTCTGGACAAGCTGCCTATCTCATGAAAAACCCAAATTATGTTGCCGGTGCCTTCTACCATTCAATTCCAGATAGTATATATTGGCCAGTATTTTTTGTTGCAACTACCGCCGCGATTGTTGCTAGCCAAGCCACCATATCTGCAACCTTTTCATTAATCAAGCAAGCCCTTGCACTTGGTTGCTTTCCAAGAGTTAAAGTTGTTCATACTTCTAAGACGTTCCGTAATCAAATATATATTCCTGATATTAATTGGATCCTGATGGTCCTTTGCATTGCCGTGACAGCTGGGTTCAAAAATCAAAGCCAAATTGGAAATGCTTCAGGGACAGCAGTGATCATAGTGATGTTGGTAACCACATGCCTCATGACTTTAATAATGATACTAGTGTGGCACTCCCACTGGGCTCTAGTCCTGCTCTTCACTTGGTTATCACTGCTCGTGGAGGGTTTCTACCTCTCCTCAGTTATCCAGAAGGTTTATCAAGGTGGGTGGGTTCCATTGGTTATAGCAACAGCGTTTTTCATCATCATGTACACTTGGCATTATGGTACAGCCAAACGTTATGAGATTGAGATGCACACTAAGGTTTCAATGGCATGGATTCTTAGCCTTGGCCCCAGTTTAGGACTTGTAAGGGTACCTGGGATAGGACTCGTGTACACAGAACTAGCAAGTGGAGTCCCCCACATCTTTTCACACTTCATCACAAACTTACCCGCCATTCATTCTGTTGTGGTTTTTGTCTGTTTGAAGTGTTTGCCTGTCTGCACAATCCCGGAAGAAGAGAGATTTTTGGTAAAACGGATTGGACCTAAGAACTTTCGCATGTTTCGCTGTGTAGCTAGATATGGTTACAAAGACCTCCACAAGAAAGATGATGACTTTGAGAAGAAACTCTTTGATAGCCTCTTCTTATTTGTTCGACTCGAGTCTTTGATGGATGGCGGGTCTTCAGATTCAGACGTGTCGAGCCTACTTGATCCACAAAATGAAACAGTTACAGAGTTCCCATTGAACACCCTTAATTCAACTTGCTCGTCTATGGAATTTACAAACCTTCGAACGGCAGACTCGATTCAGCTTGCCAATTCTCCATTGAATCAGAACCAAATCATGGTACCATCCAATCAAGCAAATCATCAGACTGAGATAGATGAGTTAGAGTTCTTGGTTAGCTGTAAAAATGTCGGCGTTGTACACATTCTTGGAAATACAGTAATGACAGCTAGGAGGGACTCCAGCCTCTTCAAAAAGATCGCCATTGATTATGTATATGCATTTCTTAGGAAGATCTGCAGAGAGAACAGCGCGATGTTCAATATTCCGCATGAGAGTTTGCTTAATGTTGGCCAAACATTCTATGTATGA 2382 41.77 MASGRKAVEDTDDRDSSIWVLDQQLDQPMEEEARRIRNAYQEKEHSVFKILQLAFQSLGIVYGDLGTSPLYVFYNTFPDGVENTEDLIGALSLIIYSLTLIPLIKYVFIVCKANDDGQGGTFALYSLLCRHAKIGTIPNHDHSDEKLTTYSCSKYREQSFAAKTKRWLEGNRVKKHAILVLVLVGSCMVIGDGILTPAISVLSAVGGINVGRTKISNDVAVLVAIVILIFLFTMQRYGTDKVGWLFAPVVFLWFILIGGIGIYNICKYDNSVLRAFSPVYIYRYFKRGGKVGWISLGGIMLSITGTEALFADLSHFPVSSIQIAFTVVVFPCLLLAYSGQAAYLMKNPNYVAGAFYHSIPDSIYWPVFFVATTAAIVASQATISATFSLIKQALALGCFPRVKVVHTSKTFRNQIYIPDINWILMVLCIAVTAGFKNQSQIGNASGTAVIIVMLVTTCLMTLIMILVWHSHWALVLLFTWLSLLVEGFYLSSVIQKVYQGGWVPLVIATAFFIIMYTWHYGTAKRYEIEMHTKVSMAWILSLGPSLGLVRVPGIGLVYTELASGVPHIFSHFITNLPAIHSVVVFVCLKCLPVCTIPEEERFLVKRIGPKNFRMFRCVARYGYKDLHKKDDDFEKKLFDSLFLFVRLESLMDGGSSDSDVSSLLDPQNETVTEFPLNTLNSTCSSMEFTNLRTADSIQLANSPLNQNQIMVPSNQANHQTEIDELEFLVSCKNVGVVHILGNTVMTARRDSSLFKKIAIDYVYAFLRKICRENSAMFNIPHESLLNVGQTFYV 793
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7035994 7040252 - CmaCh13G008530.1 Cma13g00853 306680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00853 793 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 1 790 IPR003855 GO:0015079|GO:0016020|GO:0071805
Cma13g00853 793 Pfam K+ potassium transporter 54 625 IPR003855 GO:0015079|GO:0016020|GO:0071805
Cma13g00853 793 PANTHER POTASSIUM TRANSPORTER 1 790 - -
Cma13g00853 793 TIGRFAM kup: potassium uptake protein 53 792 IPR003855 GO:0015079|GO:0016020|GO:0071805
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00394 Cma-Chr4:1995766 Cma13g00853 Cma-Chr13:7035994 0 dispersed
Cma13g00853 Cma-Chr13:7035994 Cma11g01561 Cma-Chr11:10170172 0 dispersed
Cma16g00254 Cma-Chr16:1185501 Cma13g00853 Cma-Chr13:7035994 0 dispersed
Cma13g00853 Cma-Chr13:7035994 Cma13g00855 Cma-Chr13:7042516 0 proximal
Cma18g00279 Cma-Chr18:1464937 Cma13g00853 Cma-Chr13:7035994 6.18E-95 transposed
Cma13g00853 Cma-Chr13:7035994 Cma18g00278 Cma-Chr18:1459966 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00853 K03549 - csv:101217671 1312.36