Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00855 ATGACATCGAGAGTAGAAATTGATGAGGACTCTGAAACGAAGGGAAGTATGTGGGTTCTAGACCAGAAGCTGGATCAGCCTATGGACGAAGAAGCTGGGAGACTTAGTAACATGTACAAAGAGAAGAAATTCTCGGTATTGTTGCTTCTTCGACTTGCATATCAAAGCCTTGGAGTGGTTTATGGAGATTTGGGGACTTCTCCTCTATACGTCTTCTACAATACATTTCCTCATGGGATATCTGATCCGGAGGATGTAATTGGAGCACTTTCATTAATTATATACTCTCTTACTCTCATTCCACTCATAAAGTATGTATTTATCGTGTGTAAAGCAAATGACAATGGTCAAGGTGGAACATTTGCTCTTTACTCCTTGTTATGTCGTCATGCAAAAGTAAAAACTATTCCAAACCAACATCGAACTGATGAAGAGCTAACAACATATAGCCGCTCTAAATTTCATGAGCACTCATTTGCTGCTAAAACTAAAGGATGGCTTGAAAAACGATCATCCAGGAAGAATGCTTTGCTCATTCTTGTTCTTGTTGGCACTTCCATGGTTGTTGGAGATGGAATTCTCACTCCTGCAATATCGGTTTTATCTGCTGCGGGAGGGATCAAAGTCAACCACCCCCATGTGAGCAGTGATGTAGTTGTGCTTGTTGCTGTTGTAATACTAGTGGGATTATTCAGCTTGCAACGCTACGGTACTGATAGAGTTGGTTGGCTCTTTGCTCCAGTTGTGCTACTTTGGTTTCTATTAATTGGAGGTATAGGCATGTTCAACATCTGGAAATATGATAAAACGATTCTACGAGCCTTTTCACCTGTGTATATTTTTCACTATTTTAGAAGGCGAGGGATGGATGGTTGGACGTCCCTCGGAGGCGTGTTGCTGAGTATAACAGGCACAGAGGCTTTATTTGCGGATTTGGCTCATTTTCGTGTAGCAGCTATACAGATTGCTTTTACAGTAATTGTTTTTCCCTGCCTTCTCCTGGCATATTCTGGACAGGCTGCCTACCTTATGAACAATACGGAGCATGTGGCTGATGTCTTCTACCATTCAATACCAGATTCCATATATTGGCCCGTGTTTGTTGTGGCAACGGCTGCTGCTGTGGTTGCTAGTCAAGCCACTATATCTGCAACATTTTCAATAATCAAGCAGGCTCTTGCTCATGGCTGCTTTCCAAGAGTTAAAGTTGTTCATACCTCAAAGAATTTCCTTGGTCAGATATATGTTCCAGATATTAACTGGATTCTCATGGTTCTGTGCATTGCTGTGACAGCAGGATTTAAGAATCAAAGTCAAATTGGAAATGCTTATGGGACAGCGGTTGTGGTAGTCATGCTTGTGACCACACTGCTCATGATTCTAATCATGATCTTGGTGTGGCGCTGTCATTGGATCATCGCCCTGATATTCACTGGACTCTCGCTTGTTGTAGAATGCGGTTACTTTTCAGCTGTTCTCTTCAAGGTTGATCAAGGTGGCTGGGTTCCCCTAGTGATTGCTGCGGCCTTTCTTATCATCATGTACGTGTGGCATTATGGTACTGTTAAACGATACGAATTCGAGCTGCACAGTAAAGTTTCAATGGCATGGGTTCTCGGTCTTGGTCCCAGTCTAGGACTTGTCCGCGTTCCTGGAATTGGGCTTGTCTATACCGAGCTAGCAAGCGGCGTACCTCACATATTTTCCCATTTCATTACTAATCTCCCAGCTATCCATTCTGTCGTTGTGTTTGTCTGTGTGAAATATCTCCCAGTCTACACAGTGCCAGAGGAAGAAAGATTCCTTGTCAAGCGGATAGGAACAAAGGATTTCCACATGTTTCGTTGCGTTGCTAGATATGGTTACAAAGACCTCCACAAAAAAGATGATGATTTTGAGAAAAAGCTTTTTGATAGCATCTTTCTCTTTGTCAGGCTTGAATCCATGATGGAGGGTTGTTCAGACTCTGATGAGTACAGTTTGTATGGGCAGCAAACTGAGCGTTCAAGGGACGGCCTGTTGATTGGCAGCCATGGCAATGCAGCAGCTTCATCCAATGTGGGCCCTACCCTCTCGTCAGTCGACTCAATCGTGCCGGTTGGATCTAACACAGAAAGATCATGTGAGCAAGCAAGCAACCATACTGATAGCGATGAGATTGAGTTCTTGATTAGGTGTAGAGATGCTGGGGTGGTGCACATTCTGGGAAACACTGTAATTAGAACAAGGGAATCGAAATTCTTCAAGAGGATAGCTGTGGATTACGTATATGCCTTTCTTAGGAAGATTTGCAGGGAGAACAGTGTGATTTTCAATGTTCCTCATGAGAGTTTATTAAACGTTGGCCAAATTTTCTATGTATAG 2364 42.98 MTSRVEIDEDSETKGSMWVLDQKLDQPMDEEAGRLSNMYKEKKFSVLLLLRLAYQSLGVVYGDLGTSPLYVFYNTFPHGISDPEDVIGALSLIIYSLTLIPLIKYVFIVCKANDNGQGGTFALYSLLCRHAKVKTIPNQHRTDEELTTYSRSKFHEHSFAAKTKGWLEKRSSRKNALLILVLVGTSMVVGDGILTPAISVLSAAGGIKVNHPHVSSDVVVLVAVVILVGLFSLQRYGTDRVGWLFAPVVLLWFLLIGGIGMFNIWKYDKTILRAFSPVYIFHYFRRRGMDGWTSLGGVLLSITGTEALFADLAHFRVAAIQIAFTVIVFPCLLLAYSGQAAYLMNNTEHVADVFYHSIPDSIYWPVFVVATAAAVVASQATISATFSIIKQALAHGCFPRVKVVHTSKNFLGQIYVPDINWILMVLCIAVTAGFKNQSQIGNAYGTAVVVVMLVTTLLMILIMILVWRCHWIIALIFTGLSLVVECGYFSAVLFKVDQGGWVPLVIAAAFLIIMYVWHYGTVKRYEFELHSKVSMAWVLGLGPSLGLVRVPGIGLVYTELASGVPHIFSHFITNLPAIHSVVVFVCVKYLPVYTVPEEERFLVKRIGTKDFHMFRCVARYGYKDLHKKDDDFEKKLFDSIFLFVRLESMMEGCSDSDEYSLYGQQTERSRDGLLIGSHGNAAASSNVGPTLSSVDSIVPVGSNTERSCEQASNHTDSDEIEFLIRCRDAGVVHILGNTVIRTRESKFFKRIAVDYVYAFLRKICRENSVIFNVPHESLLNVGQIFYV 787
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7042516 7048165 - CmaCh13G008550.1 Cma13g00855 306682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00855 787 TIGRFAM kup: potassium uptake protein 52 786 IPR003855 GO:0015079|GO:0016020|GO:0071805
Cma13g00855 787 PANTHER POTASSIUM TRANSPORTER 2 786 - -
Cma13g00855 787 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 2 786 IPR003855 GO:0015079|GO:0016020|GO:0071805
Cma13g00855 787 Pfam K+ potassium transporter 54 624 IPR003855 GO:0015079|GO:0016020|GO:0071805
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00855 Cma-Chr13:7042516 Cma18g00278 Cma-Chr18:1459966 0 dispersed
Cma18g00279 Cma-Chr18:1464937 Cma13g00855 Cma-Chr13:7042516 1.59E-131 dispersed
Cma13g00853 Cma-Chr13:7035994 Cma13g00855 Cma-Chr13:7042516 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00855 K03549 - csv:101217915 1410.97