Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00858 ATGTCTCAGGATTTGTCATTGGATCAAGACCTGGAAGAATCTGATCCCGAGTTCGTGGAGATTGATCCTACCGGTCGATATGGACGGTATAAGGAAGTTTTAGGAAAAGGGGCATTCAAAAGGGTATATCGGGCTTTTGATGAGTTGGAAGGAATTGAAGTAGCTTGGAATCAGATTAAGGTAACAGATTTATTGAGGAACTCTGATGATTTGGAGCGACTATATTCAGAAGTTCATTTGCTTAAGACATTGAAGCACAAGAACATAATCAAATTTTACAGTTCATGGGTTGATACGAAGAATGAAAACATCAACTTCATTACAGAGATATTCACTTCAGGGACACTGCGACAATATAGAAAGAAGCACAAGCATGTTGATTTGAGAGCACTGAAAAAATGGTCGAGGCAGATATTAGAGGGCCTTCTGTATCTTCATAGTCATGACCCTCCAGTTATACATAGAGATTTAAAATGTGACAATATCTTTGTCAATGGCAACCAAGGTGAGGTGAAAATCGGTGACTTAGGACTTGCTGCCATTCTTCAGCAAGCTCGTTCAGCTCATAGTGTCATTGGAACTCCCGAGTTTATGGCTCCAGAGTTTTACGAGGAGGAATACAATGAACTTGTGGATATTTATGCCTTTGGCATGTGTTTGCTTGAGCTTGTAACCTTTGAATATCCATATGTTGAATGTGCCAATGCTGCTCAAATATATAAGAAGGTCACATCAGGGATTAAACCAGCTTCATTGGCAAAAGTCACCAATTTAGGAGTTAAAGCATTTATAGAAAAATGTATTGCAAATGTCTCTACTCGCTTGCCTGCAAAAGATCTTTTAATGGATCCATTTCTCCAAGCAGATGATGACCATGAAAGTATACCTCGTAATTTACAATCAAAGATACTTCATACAGGAAAAAAAGAGCAGATTGATTTTGTCGATGATACTTCTGCTGAGACTTGTAGAGATTTTAGTATGCATGGTCAAAGAAAAGATGTTAACAAGATATTTCTCAAACTACGAATTGCAGATTCCATGGGTAATTTTCGCAATATCCATTTCCCATTTGATACTGAAGCTGACACAACAGTTTCTGTTGCTAGTGAAATGGTTGAGGAGTTGGACCTTTCTGATCAAGATGTCTCTACAATTTCTGAAATGATTGAAACAGAAATTCGATCCTACATTCCAGATTGGACATCAGTTGAGAATTCTGTGGATAATGTAGGAGTTGATGTTGCAATTTCTGATAGCTCGACATCTGAAACAAAGAATGTTTCCTCTCCATTGTCTATTGAATCTAATAATCTTGCTTTAGAGGTATTGCCTTCAGGTCGCAAGTATTGGTCGGACTCTCCAAAAGGTATTGGTGGGTGCTCTCCTATTAAGCCAGGTCCTTCAAACTTGTCTCTTACCTCAGATCAGAATGTTGAATCCTCTAGCAGCCACATACTTGGGAATAATCTTGATCATTCTGCAATAATTAAGGGACTGGAAAGTGAACTTTTGTCAGAGGGTGATATTCATGATAGCTCTGAGGCACATCTTTTAGAAGAGAACTGTTCTGATGAATCAGTTGACCTCAAAATAATGGCTGAGAAACTTAAAAATCTGTTGACACAACAACAAAAGGAATTAGATGAACTAAAGAGAGAGCACAAATTAGTTGTTTCAGAACTTCTCACTGAACTAACACCTGAATCTTGTCAGAAGGTTTTAGGGATGTGTAAGCTAAAGCGTTCTGATTTTGCGTTTGATCTCTGA 1770 38.19 MSQDLSLDQDLEESDPEFVEIDPTGRYGRYKEVLGKGAFKRVYRAFDELEGIEVAWNQIKVTDLLRNSDDLERLYSEVHLLKTLKHKNIIKFYSSWVDTKNENINFITEIFTSGTLRQYRKKHKHVDLRALKKWSRQILEGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILQQARSAHSVIGTPEFMAPEFYEEEYNELVDIYAFGMCLLELVTFEYPYVECANAAQIYKKVTSGIKPASLAKVTNLGVKAFIEKCIANVSTRLPAKDLLMDPFLQADDDHESIPRNLQSKILHTGKKEQIDFVDDTSAETCRDFSMHGQRKDVNKIFLKLRIADSMGNFRNIHFPFDTEADTTVSVASEMVEELDLSDQDVSTISEMIETEIRSYIPDWTSVENSVDNVGVDVAISDSSTSETKNVSSPLSIESNNLALEVLPSGRKYWSDSPKGIGGCSPIKPGPSNLSLTSDQNVESSSSHILGNNLDHSAIIKGLESELLSEGDIHDSSEAHLLEENCSDESVDLKIMAEKLKNLLTQQQKELDELKREHKLVVSELLTELTPESCQKVLGMCKLKRSDFAFDL 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7061331 7065489 + CmaCh13G008580.1 Cma13g00858 306685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00858 589 Gene3D - 336 423 - -
Cma13g00858 589 Gene3D Transferase(Phosphotransferase) domain 1 111 293 - -
Cma13g00858 589 Coils Coil 534 561 - -
Cma13g00858 589 SMART serkin_6 28 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00858 589 Gene3D Phosphorylase Kinase; domain 1 11 109 - -
Cma13g00858 589 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 8 583 - -
Cma13g00858 589 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Cma13g00858 589 SUPERFAMILY Protein kinase-like (PK-like) 30 287 IPR011009 -
Cma13g00858 589 ProSiteProfiles Protein kinase domain profile. 28 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00858 589 CDD STKc_WNK 26 286 - -
Cma13g00858 589 Pfam Protein kinase domain 31 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00858 589 PANTHER SERINE/THREONINE-PROTEIN KINASE-RELATED 8 583 - -
Cma13g00858 589 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 340 394 IPR024678 GO:0004674|GO:0005524
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma13g00858 Cma18g00193 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00935 Cma-Chr2:5561683 Cma13g00858 Cma-Chr13:7061331 1.63E-159 dispersed
Cma13g00858 Cma-Chr13:7061331 Cma17g00238 Cma-Chr17:1210638 0 dispersed
Cma16g00942 Cma-Chr16:7260086 Cma13g00858 Cma-Chr13:7061331 6.18E-129 dispersed
Cma20g00669 Cma-Chr20:3066602 Cma13g00858 Cma-Chr13:7061331 1.49E-125 dispersed
Cma13g00858 Cma-Chr13:7061331 Cma18g00193 Cma-Chr18:1004778 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69023 PF00069 Pkinase 6.00E-49 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00858 K08867 - csv:101206177 1011.91