Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00859 ATGGAGTTCAATTTTTGGGCCTCAAGGGTTCATCGCACTGAGCAACTTTCTGCTGTTCAAGCCGCCATGCTTCCTTCTGGTAACCATATAATTCTGGATGACTCTGATGGAGAAGATGATACGCGAGCTTACTTTTCATGCCCTTACTGTTATATGGATATCGAAGTTCAAGTACTTTGCAGCCATTTGCAAGAAGAGCACTGCTTTGACTTCAGAAATGCAGTTTGTCCGCTATGTGCAGCCAGTCTGGGGAAAGATGTAATTGGGCATTTTATAGCGCATCATTCAAGCTCAATAAAGAGGAGGAGAAAACCTGAGAAACCTGTATCTGCTGCATTTAGTTCCAAGAAGCTGACAACAAAGGGCAGGAGGGAAAAGAATGGATCTGCACCTGACCCTCTTCTACCCTTCATCTGCTGCATTCCTTTCTCAGACCCTGAATCTGTAGAGAGAGACGACGATTCAGTAAACGATGACTCCGTCACTGCCGCTAATGTTGTAAGTAATAGGTCACACTTGCTGGAAAGGAACCAGAACAGTGAAGAGTTGAATCAGAGAGCATCTTTTGTACAACAATTAATCACATCAACCATTTTTTAG 600 43.5 MEFNFWASRVHRTEQLSAVQAAMLPSGNHIILDDSDGEDDTRAYFSCPYCYMDIEVQVLCSHLQEEHCFDFRNAVCPLCAASLGKDVIGHFIAHHSSSIKRRRKPEKPVSAAFSSKKLTTKGRREKNGSAPDPLLPFICCIPFSDPESVERDDDSVNDDSVTAANVVSNRSHLLERNQNSEELNQRASFVQQLITSTIF 199
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7065796 7068365 - CmaCh13G008590.1 Cma13g00859 306686

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00859 199 MobiDBLite consensus disorder prediction 99 130 - -
Cma13g00859 199 Pfam Drought induced 19 protein (Di19), zinc-binding 44 96 IPR008598 -
Cma13g00859 199 PANTHER PROTEIN DEHYDRATION-INDUCED 19 HOMOLOG 5 1 199 - -
Cma13g00859 199 Pfam Stress-induced protein Di19, C-terminal 125 198 IPR027935 -
Cma13g00859 199 PANTHER PROTEIN DEHYDRATION-INDUCED 19 1 199 IPR033347 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00859 - - - mcha:111008668 337.421
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma13g00859 Cma18g00192 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00859 Cma-Chr13:7065796 Cma17g01061 Cma-Chr17:7595163 1.30E-16 dispersed
Cma13g00859 Cma-Chr13:7065796 Cma18g00192 Cma-Chr18:1003202 1.29E-99 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g833 Blo04g00718 . . . . . . . Cmo13g00888 Cmo18g00154 . . . . . Cpe20g00265 . . . . . . . . . . . . . . . . . Cone13ag0177 Cone19ag0170 . Csa01g00886 Chy12g01236 Cme12g01659 . . . . . . Bma03g00767 . . . . Cma13g00859 Cma18g00192 Car13g00700 Car18g00186 Cpe09g01002 . Bhi08g01664 . . Lac10g0495 . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008892 2 2 1 2 1 1 2 0 1 1 0 1 2 1 1 2 1 2 2 0 1 1 1 1 1 1 1 0 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g00859 Cma_Chr13 FPKM 14.947946 14.843411 10.572284 10.276922 13.980895 15.264377 15.770479 12.773404 11.745189 11.782915