Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00862 ATGGAGTCTACTATGGTGATTAAGGTTAGAATTCTCGTCTTGATTTTACTGGGGTTTTCCTGTTTCCTTGATGATGATGATGATCATCATCATCGCTGTGTTTTTCCTGTTTGCGTGTGTGTTAAATATGGAGAAATGCTAAGGCGCTTCAGTGTTAGAGCCCATGGAAACAATAAACTGGATCTTGACATCAATGGCTTGAGAGCAAAGATACTTAATCTCTTCAACTTCTCTTCTGATACTGATTTTACGCTGACTTATATTGATGAAGATGGTGATGTGGTGACCTTGGTCAATGATGATGATTTGCATGAAATGATGAGGCAACAGTTGAAGTTCTGGAAAATTGATGTGCATCTGAGAAATAAGGAAAATGACCAATCCCATAATAGATCAGATGGAAGTTCTACCCCTATGATGTCAGCAAGTGGCCAACGTTTGTTTCAAAATGTTCGTCCTGGTATCTCTGAGGTTTTGAAATCTCTGCCAGAGCCCTTACCTGAATTTTGTTCAAAGGTCTTCCTTGACATCGCTTCAAAAGCCGCAGTTGCTAGCCCTGTGTTTTCTGATCTTGCTCAGAGCTTTATTCGGTTGGGAAGCACACACCCGAACACAGGTTCCCAGGCCTCATCTGTTCCAGAGACGTGCACACAGAATGTGGTCACTGAGGGTTCTACGGGTTCTCTAGGTGCAGATTCAAAAGCTTCAAAGAATGATGGCTTTCATCAAAAAGCAGATTCAAAAGCTTCAAGGAACGATGACGTTCAATGCGCTGGTTTAGCTTATAAAGATAGAAAGGTAATTAACAGTGAGAGCATGACGAAGAACATTGGTATAGCTGGACCTGCTGTTGATCTTAATGCCCTTCCTTGTGATTCTATTGCTTCTGGATTTGCTATTGAGAAATCAGCTACTGCTGCCCCTTCCAGCAGCCCTTTTGATGGAAAGGAGGAAGAAAAACGCAATGAAATGCATGTACGCGGTCTTCCTGCATCAGTGCACACTAAACCACATAATTCACCTTCCACTGATAGGGATGGTAGGTTCGTCAACGAGTGCCCTTTTAGTGGATTACCTGCGGCTACCGAACCATCTATGCTTGGAACTGCAGGTATAGATCCAGTAAACAGTGGTTACATTGAATCTGCAGGAAGTAAGTTCCATAAAGGTCCAAATGTCAGCAGCAGTGGCTACATTGAACCACTCCATGAAGATCCAATAATTAGCAGCCGAGGTTACGTTGAACCTGTGAGAAGTATATTCCACAGAGGTGTTATTTGTGATGGCTGTGGAGCCCATCCGATTACTGGTCCACGGTTCAAGTCCCAAGTGAAAGATAATTATGATCTCTGTATGGTCTGCTTTGCTGAAATGGGCAATGAGGCTGACTACATTAGGATCGACCGTCCTGTCTCTTACTGGCGTCCAAGAATGAAATCCTGCTATCGTAGACCTCCATTTCCTGGCCCCAAAATAATCAATGCTTTGATAAGTTCTGGAAAGCAGACCAAACTTGATAGTCGCTTTGTAGACGACATTAATGTCTTGGACGGCACTGTGATGCCTCCTTGTACCCCATTTACCAAGATATGGAGGTTGTATAATAGTGGGAGTGTAAATTGGCCTCGTGGTACACAGCTAGTATGGACTGGAGGAGATAATTTCAGTCGTTCAGAATCGGTCGAATTAGAGGTTCCTGCTGATGGACTTCCTCCGGGTCGGGAAATTGACATTGCAGTTGACTTTATAGCCCCTCCATTTTCTGGTCAATACACCTCTTACTGGATTATGGCGTCTCCATCTGGCCAGAAGTTTGGACAACGTGTTTGGGTTCTTATTCAGGTTGATGCAGCACTTGGGATGCCAGATTCCGAGCATTCCCGAGCTTTGGACTCAAATTTATCCTCCTCCATAGTCATAGGTAGTGCTGGTTCAAACAGCCATGAAGGAGTAGAAAAGAATGCTACTCCTGCAATTTCTGACGGTGTCCTTCTCCCTCCTCCGAAACATCCTCGTAATTTCATTTCTATAACCGAACTAGTAAAACCTGATCTTAATGTGCCTATAAGCGAAACAGAGCTACAGTTCCTAGTAAATGAGGATATGCTAGTTGGGAAGAGTCCTGATACTTCTGCTCCTTCAATTTCTGACGGTGTCCTTCTCCCTCCTCGTAATTTCATTTCTATAACCGAACTAGTAAAACCTGATCTTAATGTGCCTATAAGCGAAACAGAGCTACAGTTCCTAGTAAATGAGGATATGCTAGTTGGGAAGAGTCCTGATACTTCTGCTCCTTCAATTTCTGACGGTGTCCTTCTCCCTCCTCGTAATTTCATTTCTATAACCGAACTAGTAAAACCTGATCTTAATGTGCCTATAAGCGAAACAGAGCTACAGTTCCTAGTAAATGAGGATATGCTAGTTGGGAAGAGTCCTGATACTTCTGCTACTGAGGATAACTTAGTCTCATCTCGCCCTGCTGTCGATGGCCATGGAGTTCTACCTCGTTCAACCGAGGTTCCCTCTGTGTCATACCCTCTTATTGATCTTTCTGTACCAACTCCAGCCGCAAACCCACCTCCTCCAATACCATCCCCCAAGGTTTCTCCAGCATCATCTGAAAAAGTCACTACTAACAACGTTGTTGAAGAAAATCTTCTTAAAACACTACAGGATATGGGATTCAAACAGGTTGATCTGAACAAGGAAGTACTGAAGAGGAACGAGTACAATCTAGAGCACTCGGTGGACGAACTCTGTGGAGTTTCCGAATGGGATCCGATGCTTGATGAGTTGGAGGAAATGGGATTCATCGACAAGGAAACGAACAAAAGACTTCTGATGAAGAACAATGGCAGCATGAAGCGAGTAGTGATGGAACTTCTATATGGGGAGAAGGCTTAG 2904 43.66 MESTMVIKVRILVLILLGFSCFLDDDDDHHHRCVFPVCVCVKYGEMLRRFSVRAHGNNKLDLDINGLRAKILNLFNFSSDTDFTLTYIDEDGDVVTLVNDDDLHEMMRQQLKFWKIDVHLRNKENDQSHNRSDGSSTPMMSASGQRLFQNVRPGISEVLKSLPEPLPEFCSKVFLDIASKAAVASPVFSDLAQSFIRLGSTHPNTGSQASSVPETCTQNVVTEGSTGSLGADSKASKNDGFHQKADSKASRNDDVQCAGLAYKDRKVINSESMTKNIGIAGPAVDLNALPCDSIASGFAIEKSATAAPSSSPFDGKEEEKRNEMHVRGLPASVHTKPHNSPSTDRDGRFVNECPFSGLPAATEPSMLGTAGIDPVNSGYIESAGSKFHKGPNVSSSGYIEPLHEDPIISSRGYVEPVRSIFHRGVICDGCGAHPITGPRFKSQVKDNYDLCMVCFAEMGNEADYIRIDRPVSYWRPRMKSCYRRPPFPGPKIINALISSGKQTKLDSRFVDDINVLDGTVMPPCTPFTKIWRLYNSGSVNWPRGTQLVWTGGDNFSRSESVELEVPADGLPPGREIDIAVDFIAPPFSGQYTSYWIMASPSGQKFGQRVWVLIQVDAALGMPDSEHSRALDSNLSSSIVIGSAGSNSHEGVEKNATPAISDGVLLPPPKHPRNFISITELVKPDLNVPISETELQFLVNEDMLVGKSPDTSAPSISDGVLLPPRNFISITELVKPDLNVPISETELQFLVNEDMLVGKSPDTSAPSISDGVLLPPRNFISITELVKPDLNVPISETELQFLVNEDMLVGKSPDTSATEDNLVSSRPAVDGHGVLPRSTEVPSVSYPLIDLSVPTPAANPPPPIPSPKVSPASSEKVTTNNVVEENLLKTLQDMGFKQVDLNKEVLKRNEYNLEHSVDELCGVSEWDPMLDELEEMGFIDKETNKRLLMKNNGSMKRVVMELLYGEKA 967
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7077823 7083014 - CmaCh13G008620.1 Cma13g00862 306689

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00862 967 Pfam PB1 domain 61 109 IPR000270 GO:0005515
Cma13g00862 967 Gene3D - 924 964 - -
Cma13g00862 967 Gene3D Immunoglobulins 499 618 IPR013783 -
Cma13g00862 967 MobiDBLite consensus disorder prediction 222 253 - -
Cma13g00862 967 MobiDBLite consensus disorder prediction 813 835 - -
Cma13g00862 967 CDD NBR1_like 503 616 IPR032350 -
Cma13g00862 967 ProSiteProfiles PB1 domain profile. 36 118 IPR000270 GO:0005515
Cma13g00862 967 Pfam Ig-like domain from next to BRCA1 gene 514 615 IPR032350 -
Cma13g00862 967 CDD UBA_NBR1 924 962 - -
Cma13g00862 967 PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED 417 720 - -
Cma13g00862 967 PANTHER PROTEIN JOKA2 837 965 - -
Cma13g00862 967 PANTHER PROTEIN JOKA2 417 720 - -
Cma13g00862 967 PANTHER PROTEIN JOKA2 38 258 - -
Cma13g00862 967 SMART PB1_new 36 121 IPR000270 GO:0005515
Cma13g00862 967 Gene3D - 36 121 - -
Cma13g00862 967 Gene3D - 877 923 - -
Cma13g00862 967 MobiDBLite consensus disorder prediction 237 251 - -
Cma13g00862 967 ProSiteProfiles Zinc finger ZZ-type profile. 422 472 IPR000433 GO:0008270
Cma13g00862 967 MobiDBLite consensus disorder prediction 304 324 - -
Cma13g00862 967 SUPERFAMILY RING/U-box 419 474 - -
Cma13g00862 967 PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED 837 965 - -
Cma13g00862 967 PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED 38 258 - -
Cma13g00862 967 MobiDBLite consensus disorder prediction 856 875 - -
Cma13g00862 967 Gene3D - 417 467 IPR043145 -
Cma13g00862 967 SUPERFAMILY UBA-like 884 920 IPR009060 GO:0005515
Cma13g00862 967 Pfam Zinc finger, ZZ type 422 457 IPR000433 GO:0008270
Cma13g00862 967 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 915 964 IPR015940 -
Cma13g00862 967 SUPERFAMILY UBA-like 925 962 IPR009060 GO:0005515
Cma13g00862 967 SUPERFAMILY CAD & PB1 domains 35 113 - -
Cma13g00862 967 SMART zz_5 421 466 IPR000433 GO:0008270
Cma13g00862 967 CDD UBA_NBR1 882 920 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00862 K17987 NBR1; next to BRCA1 gene 1 protein - csv:101205935 761.525
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma13g00862 Cma18g00191 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00862 Cma-Chr13:7077823 Cma18g00191 Cma-Chr18:990409 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g826 Blo04g00719 . . . . . . . Cmo13g00893 Cmo18g00152 . . . . . Cpe20g00262 . . . . . . . . . . . . . . . . . Cone13ag0168 Cone19ag0165 . Csa01g00883 Chy12g01240 Cme12g01663 . . . Bda14g00797 . Bpe15g00653 Bma03g00769 . Sed01g1623 . . Cma13g00862 Cma18g00191 Car13g00705 Car18g00183 Cpe09g01004 . Bhi08g01660 Tan05g1970 Cmetu12g0808 . . . . Cla03g00287 Cam03g0304 Cec03g0298 Cco03g0313 Clacu03g0305 Cmu03g0915 Cre03g0607 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004955 1 2 1 1 1 2 2 2 2 1 2 2 2 1 1 2 2 2 2 2 1 1 0 1 1 0 1 1 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g00862 Cma_Chr13 FPKM 82.203407 84.126678 84.47374 84.829155 24.544289 24.094805 26.72423 220.440582 214.887024 235.290253