Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00866 ATGGAAATGGGATCATTAGCAACAGGAACAAACCATTATTACAGCCCTTGTGCAGCCTGCAAATTCCTGAGAAGAAAATGCATATCAGGATGCATATTTGCACCCTATTTCCCACCAGAGGAGCCCCAAAAATTCGCCAATGTTCACAAGGTGTTCGGAGCCAGTAACGTGGCGAAGCTCCTCAATGAAGTTCTTCCTCATCAACGACAAGACGCCGTCGTGTCCCTCGCCTACCAAGCGGAGGCCAGAATCAGAGACCCTGTTTATGGCTGTGTTGCCGCCATTTCCTTCCTTCAAAAACAGGTCCAGAGGCTCCAAAATGAACTCGATGCAGCTAAAGCTCGCCTTTTGCTATACTCTTGCACTGATTTCTCAACCCCCTTTTCGCCTCAGTCTCAGATTATTAGCCCTCCGCTGCTTTGGAATCATAATGATATTGTTTCTGCTAATTCTTCTGTGTATTTTAATGGAGGAATTTAA 480 45.83 MEMGSLATGTNHYYSPCAACKFLRRKCISGCIFAPYFPPEEPQKFANVHKVFGASNVAKLLNEVLPHQRQDAVVSLAYQAEARIRDPVYGCVAAISFLQKQVQRLQNELDAAKARLLLYSCTDFSTPFSPQSQIISPPLLWNHNDIVSANSSVYFNGGI 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7097857 7098336 + CmaCh13G008660.1 Cma13g00866 306693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00866 159 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 10 134 - -
Cma13g00866 159 Pfam Lateral organ boundaries (LOB) domain 16 113 IPR004883 -
Cma13g00866 159 Coils Coil 95 122 - -
Cma13g00866 159 PANTHER PROTEIN LATERAL ORGAN BOUNDARIES 10 134 - -
Cma13g00866 159 ProSiteProfiles LOB domain profile. 15 116 IPR004883 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00105 Cma13g00866 CCT
Cma11g00077 Cma13g00866 CCT
Cma11g00077 Cma13g00866 ECH
Cma10g00105 Cma13g00866 ECH
Cma13g00866 Cma18g00185 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01450 Cma-Chr11:9563056 Cma13g00866 Cma-Chr13:7097857 1.01E-59 dispersed
Cma13g00866 Cma-Chr13:7097857 Cma20g01123 Cma-Chr20:8866401 1.81E-47 dispersed
Cma10g00105 Cma-Chr10:429384 Cma13g00866 Cma-Chr13:7097857 2.38E-67 wgd
Cma11g00077 Cma-Chr11:374968 Cma13g00866 Cma-Chr13:7097857 1.19E-61 wgd
Cma13g00866 Cma-Chr13:7097857 Cma18g00185 Cma-Chr18:954033 8.94E-97 wgd
Cma13g00866 Cma-Chr13:7097857 Cma04g02687 Cma-Chr4:18208584 1.76E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36127 PF03195 LOB 5.90E-41 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00866 - - dcr:108217652 201.445