Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma13g00866 | ATGGAAATGGGATCATTAGCAACAGGAACAAACCATTATTACAGCCCTTGTGCAGCCTGCAAATTCCTGAGAAGAAAATGCATATCAGGATGCATATTTGCACCCTATTTCCCACCAGAGGAGCCCCAAAAATTCGCCAATGTTCACAAGGTGTTCGGAGCCAGTAACGTGGCGAAGCTCCTCAATGAAGTTCTTCCTCATCAACGACAAGACGCCGTCGTGTCCCTCGCCTACCAAGCGGAGGCCAGAATCAGAGACCCTGTTTATGGCTGTGTTGCCGCCATTTCCTTCCTTCAAAAACAGGTCCAGAGGCTCCAAAATGAACTCGATGCAGCTAAAGCTCGCCTTTTGCTATACTCTTGCACTGATTTCTCAACCCCCTTTTCGCCTCAGTCTCAGATTATTAGCCCTCCGCTGCTTTGGAATCATAATGATATTGTTTCTGCTAATTCTTCTGTGTATTTTAATGGAGGAATTTAA | 480 | 45.83 | MEMGSLATGTNHYYSPCAACKFLRRKCISGCIFAPYFPPEEPQKFANVHKVFGASNVAKLLNEVLPHQRQDAVVSLAYQAEARIRDPVYGCVAAISFLQKQVQRLQNELDAAKARLLLYSCTDFSTPFSPQSQIISPPLLWNHNDIVSANSSVYFNGGI | 159 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 7097857 | 7098336 | + | CmaCh13G008660.1 | Cma13g00866 | 306693 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma13g00866 | 159 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 10 | 134 | - | - | |
Cma13g00866 | 159 | Pfam | Lateral organ boundaries (LOB) domain | 16 | 113 | IPR004883 | - | |
Cma13g00866 | 159 | Coils | Coil | 95 | 122 | - | - | |
Cma13g00866 | 159 | PANTHER | PROTEIN LATERAL ORGAN BOUNDARIES | 10 | 134 | - | - | |
Cma13g00866 | 159 | ProSiteProfiles | LOB domain profile. | 15 | 116 | IPR004883 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma10g00105 | Cma13g00866 | CCT | |
Cma11g00077 | Cma13g00866 | CCT | |
Cma11g00077 | Cma13g00866 | ECH | |
Cma10g00105 | Cma13g00866 | ECH | |
Cma13g00866 | Cma18g00185 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma11g01450 | Cma-Chr11:9563056 | Cma13g00866 | Cma-Chr13:7097857 | 1.01E-59 | dispersed | |
Cma13g00866 | Cma-Chr13:7097857 | Cma20g01123 | Cma-Chr20:8866401 | 1.81E-47 | dispersed | |
Cma10g00105 | Cma-Chr10:429384 | Cma13g00866 | Cma-Chr13:7097857 | 2.38E-67 | wgd | |
Cma11g00077 | Cma-Chr11:374968 | Cma13g00866 | Cma-Chr13:7097857 | 1.19E-61 | wgd | |
Cma13g00866 | Cma-Chr13:7097857 | Cma18g00185 | Cma-Chr18:954033 | 8.94E-97 | wgd | |
Cma13g00866 | Cma-Chr13:7097857 | Cma04g02687 | Cma-Chr4:18208584 | 1.76E-57 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36127 | PF03195 | LOB | 5.90E-41 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma13g00866 | - | - | dcr:108217652 | 201.445 |