Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00872 ATGCCTTCTTCTTCTTCTTGTTTTGTTGTTTTGCTTCTGGTTTTTACTTCTTTCTCCTCTGTTTTCCCAACTTCCATAGCCCATAAGACGCCGCCAAAAAACCAAACTTATTTTCACCCCTCCAAAGAGCTGAATGAACTGAAGCATATCAGAGCTTATTTACGCAAAATCAACAAGCCTCCAACCAAGACAATTCAGAGCTCGGATGGCGATGTTATAGACTGTGTTCTTTCTCATCTCCAGCCTGCTTTTGATCATCCTCACCTCAAAGGACACACTCCATTGCGACCGCCGGAGAGGCCGAGAGGGAACAACTCCGGGGAAGAAGTGGCAGAGAACTTCCAGTTATGGTCAGCCTCAGGCGATTTCTGCCCGGAAGGGACAATTCCAATCAGAAGAACAACAGAGCAAGACATTTACAGAGCAAGTTCTTTCAGAAGATTTGGAAGAAAACCCATTAGACATATGAGGAGAGATTCTTCTGGCAATGGCCATGAGCATGCTGTGGTGTTTGTGAATGGAGAACAATATTATGGAGCAAAGGCGAGCTTAAACATATGGGCACCTCGTGTTACTGATCAAAACGAATTCAGCTTATCACAAATCTGGGTCATTTCAGGCTCTTTTGGCAATGATTTGAACACCATTGAAGCTGGATGGCAGGTTAGTCCTGAGTTGTACGGCGACAACAATCCTAGATTCTTTACGTACTGGACGACTGATGCTTATCAAGCCACTGGATGTTACAATCTACTTTGCTCGGGCTTCGTTCAAACGAACAACCGGATCGCCATTGGAGCAGCCATTTCGCCTATGTCCTCTTACAATGGGAAGCAATTCGACGTTGGCATAATGGTTTGGAAGGATCCGAAGCATGGGCATTGGTGGCTAGAATACGGGTCGGGTTTGCTAGTGGGGTACTGGCCAGCGTTTTTGTTTAGCCATTTGAGGAGCCATGGAAGCATGGTGCAGTTTGGAGGGGAGATTGTGAACAGCAGAGGGTCAGGGTTCCACACAGCCACGGAAATGGGGAGTGGGCATTTTGGTGAAGAAGGGTTTGCGAAAGCTTCTTATTTTAGGAACTTGCAGGTGGTTGATTGGGACAATAATTTGCTTCCTCTTACCAATCTTCATGTCTTGGCTGACCATTCTGACTGCTATGATATTAGACAAGGCACTAATGATGTTTGGGGCACTTATTTTTACTATGGAGGTCCCGGTAGGAATGTTAAATGCCCTTGA 1242 45.73 MPSSSSCFVVLLLVFTSFSSVFPTSIAHKTPPKNQTYFHPSKELNELKHIRAYLRKINKPPTKTIQSSDGDVIDCVLSHLQPAFDHPHLKGHTPLRPPERPRGNNSGEEVAENFQLWSASGDFCPEGTIPIRRTTEQDIYRASSFRRFGRKPIRHMRRDSSGNGHEHAVVFVNGEQYYGAKASLNIWAPRVTDQNEFSLSQIWVISGSFGNDLNTIEAGWQVSPELYGDNNPRFFTYWTTDAYQATGCYNLLCSGFVQTNNRIAIGAAISPMSSYNGKQFDVGIMVWKDPKHGHWWLEYGSGLLVGYWPAFLFSHLRSHGSMVQFGGEIVNSRGSGFHTATEMGSGHFGEEGFAKASYFRNLQVVDWDNNLLPLTNLHVLADHSDCYDIRQGTNDVWGTYFYYGGPGRNVKCP 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7116741 7118681 - CmaCh13G008720.1 Cma13g00872 306699

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00872 413 MobiDBLite consensus disorder prediction 85 108 - -
Cma13g00872 413 PANTHER PROTEIN, PUTATIVE (DUF239)-RELATED-RELATED 8 413 - -
Cma13g00872 413 Pfam Neprosin activation peptide 64 170 IPR025521 -
Cma13g00872 413 Gene3D - 187 300 - -
Cma13g00872 413 PANTHER - 8 413 - -
Cma13g00872 413 MobiDBLite consensus disorder prediction 85 106 - -
Cma13g00872 413 Pfam Neprosin 194 406 IPR004314 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00872 - - - csv:101205708 755.747
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g00085 Cma13g00872 CCT
Cma10g00116 Cma13g00872 CCT
Cma11g00085 Cma13g00872 ECH
Cma10g00116 Cma13g00872 ECH
Cma13g00872 Cma18g00182 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00031 Cma-Chr12:114723 Cma13g00872 Cma-Chr13:7116741 0 dispersed
Cma17g00918 Cma-Chr17:6919896 Cma13g00872 Cma-Chr13:7116741 8.32E-158 dispersed
Cma18g00779 Cma-Chr18:6894202 Cma13g00872 Cma-Chr13:7116741 7.44E-09 dispersed
Cma10g00116 Cma-Chr10:493658 Cma13g00872 Cma-Chr13:7116741 0 wgd
Cma11g00085 Cma-Chr11:415189 Cma13g00872 Cma-Chr13:7116741 0 wgd
Cma13g00872 Cma-Chr13:7116741 Cma18g00182 Cma-Chr18:933788 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g789 Blo04g00727 . . Bda15g00548 . Bpe13g00246 Bma06g00214 . Cmo13g00905 Cmo18g00140 Cma10g00116 Cma11g00085 . . Sed08g0099 . . Bhi02g00481 Tan09g2278 Cmetu02g0831 . Hepe09g0215 . . Cla06g01676 Cam06g1864 Cec06g1913 Cco06g1918 Clacu06g1819 Cmu06g1761 Cre06g2578 Cone2ag0921 Cone16ag0086 Cone13ag0154 Cone19ag0153 Lsi02g00392 Csa01g00870 Chy12g01252 Cme12g01676 . . Bda11g01659 Bda14g00803 . Bpe15g00645 . Bma08g00090 Sed08g2526 Cmo10g00121 Cmo11g00086 Cma13g00872 Cma18g00182 Car13g00714 . . . Bhi08g01642 Tan05g1987 Cmetu12g0625 . Hepe07g2212 . . Cla01g01316 Cam01g1414 Cec01g1445 Cco01g1478 Clacu01g1381 Cmu01g1291 Cre01g1250 Lsi06g01565 Csa01g00133 Chy02g02594 Cme02g01990
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001583 3 3 3 3 3 2 1 2 2 2 2 2 4 2 2 4 2 4 0 2 2 3 2 2 2 1 2 6 2 1 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g00872 Cma_Chr13 FPKM 4.347709 6.049944 2.24237 2.36516 4.625693 3.822188 5.746583 0.0 0.0 0.0