Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00875 ATGGACCCCAAGTCGCCTTCGAAACTTAAGCCGTCACCAACGAGATTCTCTAAGCATAAATGGATATTAAGCGTAACTGTTATTGTCATTGTTACAATTGTGATTTCACGTGGTGCAATTCTGGCATTTAAATCTCTAGTTTCTAATGCACCGAAAGAGCTTTATTATACTGTGGTCGTGGACTGTGGAAGCACGGGCACACGAATAGATGTATATGAATGGACGTTGGGGATGAAGGATGGTAGTAAATTGCCTGTTTTATTGCGTTCTTTTCCTAACAATTCAACTAAGAGTCCGCTTCGAAAGAAATCTTGTAGTTATCACTGTATGCAAACCCAGCCGGGGTTGGATAAATTTGTTGGCAATATTTCAGCTATAAGGGCTTCTTTGAAACCATTGATTGAGTGGGCAGAACAGGAGATACCGGTTGAAAGGCATGCAATTACTCCTATTTTTGTTTTATCTACTGCTGGACTGAGGAGATTGGCAAATGAGGATGCCGAGCGGGTTTTGGAAGATATCGAGGCTGTTATTAAGGAGCATTCTTTCATGTATCAAAAAAGTTGGATAAGAGTGCTGAGTGGTATAGAAGAAGCTTATTATGGTTGGGTTGCTTTAAATTACAAAATGGGGAGCTTTAGAAACAGTTCAAGGTCAGGCACGTTGGGAATTCTTGATTTGGGTGGTTCCTCGTTGCAGGTTGTGATGGAATCAGACCGTAAAAGGGAAGAAAGGGAAGAAATGCACTTAATGAGATCAAAAGTTGGATCCATTGAGCAACAGGTTTTGGCTTTCTCATGGGAAGCTTTTGGTTTGAATGAGGCATTTGATAGGACTCTTCTTTTGCTCAATCAAACACAGCAACTTGGAGAAAGTAACATGACTACAGTGGAGCTCAGACATCCTTGCCTTAGTTCAAGTTTTATGCAAAAGTATACATGCTATAATTGTTTAAGCCATAACAATACGGGCCAGGGGAAATTGAGTCGTCAAATCCCCAATCTTGGATATCCTTTTTATTTGGTTGGGAGACCAAATTGGGAGCAGTGCAAACGAATAGCTAGGGCTGCTGCAATCAATTCCAGCACTTTAGCTTGGTCTGAGCCTACCAACGCTACAAAATGTCTTGCTAGCCCGTTCTCTTTGAATGGTGGTAATAATACAGTTGTGCACATTTCCACCACACGTTTCCATGCTCTATCAGGATTCTTTGCAGTCTATCAATCAGTAAATCTGTCTACAAGAGCCAATTGGACAAACATATGGAAAAGAGGCCTGGAGTTATGCTCTGCTTCTCAAGCTGATATGACGCTGAGTATTTCAGGAAACCAAACTAGTTTGTGGCAATATTGTTTCCAGTTACCATATATGGCATCACTCATTGAGGATGCTCTCTGTCTTGGCGATAAAGAAGTGATTTTTGGTCCTCCGGATGTCTCCTGGACTCTAGGAGCCGCGTTGATAGAGGGAGAGTACTTGTGGTCAAGTTCAAGTACAACAACAACAATTGAGAATCACAATTCAACTTTGGGAAAAATTGAGCCTATATATGTATTTCTGTTTCTTCTGTGTCTTCTATTGGTTGTTTATCATAATCAAATAAAGCTACCTATGTTAGGCAGAAAGGCAGCAGCGGCTGGGGCATCTCTGCCATCTTATGCCCTTCCAAAACACAGGCCGAACTGA 1686 41.46 MDPKSPSKLKPSPTRFSKHKWILSVTVIVIVTIVISRGAILAFKSLVSNAPKELYYTVVVDCGSTGTRIDVYEWTLGMKDGSKLPVLLRSFPNNSTKSPLRKKSCSYHCMQTQPGLDKFVGNISAIRASLKPLIEWAEQEIPVERHAITPIFVLSTAGLRRLANEDAERVLEDIEAVIKEHSFMYQKSWIRVLSGIEEAYYGWVALNYKMGSFRNSSRSGTLGILDLGGSSLQVVMESDRKREEREEMHLMRSKVGSIEQQVLAFSWEAFGLNEAFDRTLLLLNQTQQLGESNMTTVELRHPCLSSSFMQKYTCYNCLSHNNTGQGKLSRQIPNLGYPFYLVGRPNWEQCKRIARAAAINSSTLAWSEPTNATKCLASPFSLNGGNNTVVHISTTRFHALSGFFAVYQSVNLSTRANWTNIWKRGLELCSASQADMTLSISGNQTSLWQYCFQLPYMASLIEDALCLGDKEVIFGPPDVSWTLGAALIEGEYLWSSSSTTTTIENHNSTLGKIEPIYVFLFLLCLLLVVYHNQIKLPMLGRKAAAAGASLPSYALPKHRPN 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7124492 7126589 - CmaCh13G008750.1 Cma13g00875 306702

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00875 561 Gene3D - 44 194 - -
Cma13g00875 561 Pfam GDA1/CD39 (nucleoside phosphatase) family 51 487 IPR000407 GO:0016787
Cma13g00875 561 PANTHER ADENOSINE/GUANOSINE DIPHOSPHATASE 3 560 IPR000407 GO:0016787
Cma13g00875 561 Gene3D Exopolyphosphatase. Domain 2 195 474 - -
Cma13g00875 561 PANTHER GDA1/CD39 NUCLEOSIDE PHOSPHATASE FAMILY PROTEIN 3 560 - -
Cma13g00875 561 CDD NBD_sugar-kinase_HSP70_actin 58 251 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00875 - - - cmo:103483706 936.406
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00604 Cma-Chr4:3071830 Cma13g00875 Cma-Chr13:7124492 1.91E-88 dispersed
Cma09g01056 Cma-Chr9:5518678 Cma13g00875 Cma-Chr13:7124492 4.29E-20 dispersed
Cma13g00875 Cma-Chr13:7124492 Cma16g00502 Cma-Chr16:2557729 4.03E-93 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g782 . . . . . . . . Cmo13g00908 . . . . . . Cpe20g00252 . . . . . . . . . . . . . . . Cone2ag0919 Cone16ag0088 . . Lsi02g00388 Csa01g00867 Chy12g01255 Cme12g01679 . . . . . . . . . . . Cma13g00875 . Car13g00717 . . . Bhi08g01639 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013004 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g00875 Cma_Chr13 FPKM 10.071699 10.943562 12.465531 13.988461 8.120302 8.181928 7.422759 18.598742 20.013906 21.75775