Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00880 ATGGATTCGAAGTCACAGATTCAATCCAATTTCTTCAACATTACTCTTCTGAAAAAAGTAGCCCTAATCATCCCCTTAAACCCGAGCGCAATCTCTACACCATCTCAAGCAAAGTATCAATTTCCCCAAATCAAATCCCTCCTCCGTCAAGCTCAATTCTCACTCACTCCTCCTCCTTCATCTCCTTCAACCATGTCCACAACCACTCTCCTCTTCTTCTCTCTCATCTTCTCATCTCTTCCACTATTCAGTTCCACAACCAACATCCACTCCAACCCCTGCCGGTCCTTCTGCGGCAACATCACCGTCGACTATCCTTTCTCCCTCCAGAACGGCTGCGGCCATCCTGGCTACCGCGACCTTCTGTACTGCATGAACGATGTTCTAATGTTCCACATCCGATCCGGATCCTACAGAGTCTTGGACATCGATTACGCTTACGAATCCCTAACTCTCCACGACCCTCACATGTCGACCTGCGACACAATCGTCCTAGGAGGTCGAGGCAACGGCTTCGACGTCGAAGAGTGGCGGTCGCCGTACCTAAATCCGACGTCCGATAACGCCTTTCTCCTCATCGGCTGCTCCGCCCAATCGCCGCTCTTCCAAGGATTCCCAAACAAGCATCTCGTCTGTAGAAACATTTCCGGTATGAGCTGCGAGGAGTATTACGACTGTCCGGCGTGGGATTTACTGGGCCATCGGCGACCGGATCGGGTTTACGGGTCCGGCCCACCAGAGTGCTGTGCGATTCCTTTTGGGTCCATTAAGGCCATAAATCTCACGAAACTCCAGTGTGAAGGCTATAGTAGTGCTTATAGTTTGGCCCCGTTGAGGATTAATGGGCCTGATGAGTGGGCCTACGGAATCCGTGTGAAATATTCCGTCCAAGCAAATGAAGACTTTTGCCGAGCGTGCCAAGCCACTGGCGGCACGTGCGGCTATGGCACCGATGGTGATAGACAGTTGTGCATGTGTGGGACCACCAATTCTACCTCTACTTGTGATTTCCTTATGAGCTCATTATCAACGAGGAGGACGTCATGGACAATAATCAAATCCATATTCGCAGAAAATCGTCGTCACGTCGTATTCGGGGCCGAAGCCTGGTTTCGACATCCATTACTAATGGCGTTTTCCTCTCTTCTATCTCCGGTTTCGTGGCATTCTTCTTTCACTTGCAATTCTGAAGCGGGCTCTCTGTGTTTTGCTACCTTCGATTGTCCAAGTCCTCAGCGAAGGCGAAGCTTTAGCAAGTTCAGGGGTCTGAATTTCCACCTTCCGCCCTTGATTTCGGCTTCAAGAACGGTGGCCACCGCTGCTGTGTCACCGGCAGCAGTTGCAAATTCGGCCGCGCCAGTTACTTCATTCACTAATTTGATTGAATCTCTGATTAATCGCGTGGATTTGTCGGAGGATGAAGCGGAGGCGTCTCTTCAATATCTTCTCAACGATGCCAGCGAGGCATCAATTAGTGCTTTCCTCGTGTTACTCAGAGCCAAAGGAGAGACTTATGAAGAAATTGTGGGACTTGCAAGGGCGATGATCAAGCGTAGTGTGAAAGTGGATGGCTTATTTGATGCCGTTGACATAGTTGGAACAGGTGGAGATGGAGCAAACACAGTAAACATCTCAACTGGTGCTTCAATACTTGCTGCAGCATGCGGCACAAAGGTTGCAAAGCAAGGAAACCGTTCGAGTTCTTCAGCATGTGGAAGTGCTGATGTCTTAGAGGCACTTGGGGTAGTTATTGATTTGGGACCTGAGGGAGTTGCCAAGTGTGTTGATGAAGCTGGAATGGGCTTCATGATGTCTCCCAAATACCATCCTGCAATGAAGATTGTCAGTCCTGTCAGGAAGAAGCTAAAAGTAAAAACTGTATTTAACATACTGGGCCCTATGCTCAATCCGGCTAGAGTTCCTTTCGCTGTTGTTGGTGTATATTCTGAGAACTTGGTCCCCAAAATGGCTAAAGCACTGCAACTATTTGGCATGAAAAGAGCATTAGTAGTTCACTCGGAGGGCTTAGATGAGATGAGTCCCCTTGGACCAGGACTTATTCTTGATGTAACACCTGAAAAGGTTGATAAGTTTGCCTTTGATCCATTGGATTTTGGCATCCCTCGTTGCACTATAGATGACCTTCGAGGTGGAGACCCCGATTATAATGCAGAGGTCTTGAAGCGCATTTTATCTGGGGAAGAGGGGCATATTGCAAATGCACTTATCCTTAATGCTGCTGCTGCCCTTCTGGTTAGCAGCAAAGTGACCACATTGGCCGAGGGAGTTAAGTTGGCTCGTGAAACTCAACGGTCTGGAAAAGCCATGAAGACTCTTAATTTGTTGATTGAACTCTCCAATGTAATTAGTAGTGTGTACTTTCTCAATTTCCATCTGTTATTAGCAGTTCTCATTCCCAGTTTTGAATGA 2430 48.11 MDSKSQIQSNFFNITLLKKVALIIPLNPSAISTPSQAKYQFPQIKSLLRQAQFSLTPPPSSPSTMSTTTLLFFSLIFSSLPLFSSTTNIHSNPCRSFCGNITVDYPFSLQNGCGHPGYRDLLYCMNDVLMFHIRSGSYRVLDIDYAYESLTLHDPHMSTCDTIVLGGRGNGFDVEEWRSPYLNPTSDNAFLLIGCSAQSPLFQGFPNKHLVCRNISGMSCEEYYDCPAWDLLGHRRPDRVYGSGPPECCAIPFGSIKAINLTKLQCEGYSSAYSLAPLRINGPDEWAYGIRVKYSVQANEDFCRACQATGGTCGYGTDGDRQLCMCGTTNSTSTCDFLMSSLSTRRTSWTIIKSIFAENRRHVVFGAEAWFRHPLLMAFSSLLSPVSWHSSFTCNSEAGSLCFATFDCPSPQRRRSFSKFRGLNFHLPPLISASRTVATAAVSPAAVANSAAPVTSFTNLIESLINRVDLSEDEAEASLQYLLNDASEASISAFLVLLRAKGETYEEIVGLARAMIKRSVKVDGLFDAVDIVGTGGDGANTVNISTGASILAAACGTKVAKQGNRSSSSACGSADVLEALGVVIDLGPEGVAKCVDEAGMGFMMSPKYHPAMKIVSPVRKKLKVKTVFNILGPMLNPARVPFAVVGVYSENLVPKMAKALQLFGMKRALVVHSEGLDEMSPLGPGLILDVTPEKVDKFAFDPLDFGIPRCTIDDLRGGDPDYNAEVLKRILSGEEGHIANALILNAAAALLVSSKVTTLAEGVKLARETQRSGKAMKTLNLLIELSNVISSVYFLNFHLLLAVLIPSFE 809
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7139943 7145706 - CmaCh13G008800.1 Cma13g00880 306707

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00880 809 Gene3D Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 525 792 IPR035902 -
Cma13g00880 809 Pfam Glycosyl transferase family, helical bundle domain 460 518 IPR017459 -
Cma13g00880 809 Pfam Glycosyl transferase family, a/b domain 527 775 IPR000312 GO:0016757
Cma13g00880 809 TIGRFAM trpD: anthranilate phosphoribosyltransferase 461 783 IPR005940 GO:0000162|GO:0004048
Cma13g00880 809 Gene3D Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 459 522 - -
Cma13g00880 809 Pfam Wall-associated receptor kinase galacturonan-binding 94 154 IPR025287 GO:0030247
Cma13g00880 809 PANTHER ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE 429 790 IPR005940 GO:0000162|GO:0004048
Cma13g00880 809 Hamap Anthranilate phosphoribosyltransferase [trpD]. 459 785 IPR005940 GO:0000162|GO:0004048
Cma13g00880 809 PANTHER ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE, CHLOROPLASTIC-LIKE ISOFORM X1 429 790 - -
Cma13g00880 809 SUPERFAMILY Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 527 784 IPR035902 -
Cma13g00880 809 SUPERFAMILY Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 456 522 IPR036320 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00880 K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18] - cpep:111782839 675.241
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma13g00880 Cma18g00177 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00945 Cma-Chr5:7631125 Cma13g00880 Cma-Chr13:7139943 7.00E-25 transposed
Cma14g01567 Cma-Chr14:11754473 Cma13g00880 Cma-Chr13:7139943 7.46E-38 transposed
Cma13g00880 Cma-Chr13:7139943 Cma18g00177 Cma-Chr18:893905 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g769 . . . Bda15g00552 . . . . Cmo13g00911 Cmo18g00135 . . . . . . . . . . . . . . . . . . . . . Cone2ag0914 Cone16ag0094 . . . Csa01g00860 Chy12g01261 Cme12g01686 . . . . . . . Bma08g00097 Sed08g2520 . . Cma13g00880 Cma18g00177 Car13g00721 Car18g00167 Cpe09g01019 . Bhi08g01623 Tan05g1996 Cmetu12g1069 Lac10g0458 Hepe07g2219 . . Cla01g01307 Cam01g1423 Cec01g1457 Cco01g1466 Clacu01g1372 Cmu01g1280 Cre01g1259 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009653 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 2 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g00880 Cma_Chr13 FPKM 10.98066 11.174584 18.56756 18.291191 14.973145 16.750778 15.020711 7.394336 6.997391 7.489105