Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00884 ATGCATTCGTTGAGCTTCAAGGTTTTGGGTGATTTTAATGCGAGATCGAGGATGAATTTACCGGGACGAGGAAGCTTTTGTGTTCCGGAAATGGAGGTCGGGGCAATGAGGTGTTTTGGGCGCCATCGAGCATTTGGAAGAACCTGTAGGATTGTAGCGTGCGCTTCGGAGAGAAATGGTGATGGTGGTGGAGGAAAACAGAGCCAGAGCTCGAGTACGAGTCCGAGTCGTTCGTTTCTGTCCCGCAGTGAAACTTATGCTCTACTGAAGCAGCAATTGGAGGTTGCCGCCAAGTCCGAGGATTATGAAGAAGCTGCAAGGATACGCGACTCGTTAAAATTATTTGAAGAGGAAGAGCCAGTTTTGCGTCTTCGAAGATTGATGAAGGAAGCGATTTCTAGTGAGAGATTTGAGGATGCCGCTAAATATCGTGATGAGCTGAATGAAATTGCCCCTCACTGTCTTCTGAAATGTGCAAGTGATGCAACAACTCTGGGTATCAGGGTACAAGTTAGGAGCGTTTACATTGAAGGTCGAAGCCAACCTTCAAAGAATCACTACTTTTTTGCATATCGAATAAGGATAACCAATAATTCAGACCGTCCAATTCAACTTCTCAGAAGACATTGGATTATCACCGATGCAAATGGGCGAACAGAAAACGTCTGGGGCGTTGGTGTTATTGGTGAACAACCAGTCATACTTCCTAGGACTGGTTTTGAATATTCATCAGCATGCCCATTAAGTACTGCTAACGGCAGAATGGAAGGTGACTTTGAAATGAAGTACATTGATCGAGTGGGCGAACAATCATTTAACGTTGCTATTGCTCCATTCTCTCTCTCCATATTAGGAGATAGCTCAGATGCTTTCTAA 876 44.75 MHSLSFKVLGDFNARSRMNLPGRGSFCVPEMEVGAMRCFGRHRAFGRTCRIVACASERNGDGGGGKQSQSSSTSPSRSFLSRSETYALLKQQLEVAAKSEDYEEAARIRDSLKLFEEEEPVLRLRRLMKEAISSERFEDAAKYRDELNEIAPHCLLKCASDATTLGIRVQVRSVYIEGRSQPSKNHYFFAYRIRITNNSDRPIQLLRRHWIITDANGRTENVWGVGVIGEQPVILPRTGFEYSSACPLSTANGRMEGDFEMKYIDRVGEQSFNVAIAPFSLSILGDSSDAF 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7153110 7156092 - CmaCh13G008840.1 Cma13g00884 306711

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00884 291 Pfam UvrB/uvrC motif 89 117 IPR001943 GO:0005515
Cma13g00884 291 Pfam UvrB/uvrC motif 123 150 IPR001943 GO:0005515
Cma13g00884 291 ProSiteProfiles ApaG domain profile. 161 288 IPR007474 -
Cma13g00884 291 MobiDBLite consensus disorder prediction 62 79 - -
Cma13g00884 291 MobiDBLite consensus disorder prediction 59 79 - -
Cma13g00884 291 SUPERFAMILY ApaG-like 163 283 IPR036767 -
Cma13g00884 291 Gene3D ApaG domain 157 287 IPR036767 -
Cma13g00884 291 Pfam ApaG domain 179 262 IPR007474 -
Cma13g00884 291 ProSiteProfiles UVR domain profile. 118 153 IPR001943 GO:0005515
Cma13g00884 291 ProSiteProfiles UVR domain profile. 83 118 IPR001943 GO:0005515
Cma13g00884 291 PANTHER OS05G0170800 PROTEIN 1 290 - -
Cma13g00884 291 SUPERFAMILY C-terminal UvrC-binding domain of UvrB 83 116 IPR036876 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00884 - - - cmax:111495061 545.814
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma13g00884 Cma18g00173 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00884 Cma-Chr13:7153110 Cma14g01517 Cma-Chr14:11480883 1.87E-06 dispersed
Cma13g00884 Cma-Chr13:7153110 Cma18g00173 Cma-Chr18:878630 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g763 Blo04g00731 Blo16g00226 . . . Bpe13g00244 Bma06g00216 . Cmo13g00913 Cmo18g00131 . . . . . Cpe20g00247 . . . . . . . . . . . . . . . Cone2ag0911 Cone16ag0097 . . Lsi02g00378 Csa01g00857 Chy12g01263 Cme12g01689 . . Bda11g01657 Bda14g00808 . Bpe15g00640 . . Sed08g2516 . . Cma13g00884 Cma18g00173 Car13g00724 Car18g00164 Cpe09g01022 . Bhi08g01618 Tan05g2002 Cmetu12g1934 Lac10g0456 Hepe07g2222 . . Cla01g01304 Cam01g1426 Cec01g1459 . . Cmu01g1276 Cre01g1261 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010271 2 1 2 1 2 0 2 0 0 0 1 0 2 1 0 2 1 2 2 0 1 0 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g00884 Cma_Chr13 FPKM 5.702418 6.047929 4.884585 6.03906 15.437186 14.094865 15.2866 6.640879 5.328285 5.357293