Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00885 ATGCAGAGCTCTTCGGTCACCTTTTCGCCTTCTCTTCCACTTCTCAAGCCTCGGAGGCCTCATACTTCGTTCTTCAGCTCAGGATGTAACTCAATTCGATCATCTTCTTCAAATTCCAGAGATCTCAGTGACCTGAACAATGTCAGTCTTCCTTCCTCTTGGCCCCGGCGATCTTGGACTTTGTCGAATTCTCCTTTTTCGTCCTCGAAACTCCGCCCATGGACCGGTGTACCTTCGTTTGCTTCGGATTTTGATGCGAATCATTTCAAGGTTCAGGCCGCTGCGGTTCCGGAAAGCTCAGAGGAGGCCGCCAGTGCTGGCGGTAGCCTAATGAAAACGTTGGAGCTCGGATTGTTGTTTGGCCTCTGGTACCTTTTCAACATCTACTTTAACATCTTCAACAAGCAGGTCCTCAAGGTGTTTCCGTTCCCTGTAACTGTCACTGCTGTTCAATTTGCCGTAGGCACTGTACTTGTTCTTCTTATGTGGGGACTTAATCTCTGCAAAAGGCCTAAGATTAGTGGCGCTCAGCTTGCTGCTGTTCTGCCGCTCGCGTTAGTTCATACATTGGGAAATCTTTTTACGAACATGAGTCTTGGGAAAGTGGCCGTATCGTTCACCCACACAATTAAAGCTATGGAGCCTTTTTTTTCAGTTATCCTGTCAGCAATGTTTCTTGGAGAGACTCCTACTCCCTGGGTTGTTGCATCCATTATACCAATTGTTGGCGGTGTTGCATTGGCATCTGCCACTGAGGCCTCCTTCAACTGGGCCGGATTTTCTAGTGCAATGGCATCCAATTTGACTAATCAATCTCGTAATGTCCTTAGCAAAAAGGTCATGGCGAAAAAAGAGGATTCAATGGACAACATCACCCTCTTTTCAATTATAACAATCATGTCCTTTTTCTTATTGTCCCCTGTTGCTGTCTTCATGGAAGGTGTCAAGGTTACTCCTGCATACTTACAATCAGCTGGATTGAACGTAAACCAAGTCTTCACTAGGTCTCTTCTTGCTGCCCTTTGTTTCCATGCATACCAACAGGTTTCTTACATGATATTGCAAAGAGTATCGCCTGTTACCCACTCAGTAGGCAATTGTGTAAAGCGTGTTGTTGTCATCGTGAGCTCTGTTATCTTCTTCCAAACACCTGTTTCTCCAATCAACTCTATTGGCACTGGAATAGCTCTTGCTGGGGTTTTCCTGTATTCAAGGGTTAAGCGCATCAAAGCCAAGCCGAAGACTGCTTAA 1251 45.88 MQSSSVTFSPSLPLLKPRRPHTSFFSSGCNSIRSSSSNSRDLSDLNNVSLPSSWPRRSWTLSNSPFSSSKLRPWTGVPSFASDFDANHFKVQAAAVPESSEEAASAGGSLMKTLELGLLFGLWYLFNIYFNIFNKQVLKVFPFPVTVTAVQFAVGTVLVLLMWGLNLCKRPKISGAQLAAVLPLALVHTLGNLFTNMSLGKVAVSFTHTIKAMEPFFSVILSAMFLGETPTPWVVASIIPIVGGVALASATEASFNWAGFSSAMASNLTNQSRNVLSKKVMAKKEDSMDNITLFSIITIMSFFLLSPVAVFMEGVKVTPAYLQSAGLNVNQVFTRSLLAALCFHAYQQVSYMILQRVSPVTHSVGNCVKRVVVIVSSVIFFQTPVSPINSIGTGIALAGVFLYSRVKRIKAKPKTA 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7158062 7161660 + CmaCh13G008850.1 Cma13g00885 306712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00885 416 SUPERFAMILY Multidrug resistance efflux transporter EmrE 328 407 - -
Cma13g00885 416 PANTHER SOLUTE CARRIER FAMILY 35 25 391 - -
Cma13g00885 416 SUPERFAMILY Multidrug resistance efflux transporter EmrE 159 249 - -
Cma13g00885 416 Pfam Triose-phosphate Transporter family 115 404 IPR004853 -
Cma13g00885 416 PANTHER TRIOSE PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR-RELATED 25 391 - -
Cma13g00885 416 TIGRFAM tpt: Tpt phosphate/phosphoenolpyruvate translocator 114 414 IPR004696 GO:0016021|GO:0022857|GO:0055085
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma13g00885 Cma18g00172 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00885 Cma-Chr13:7158062 Cma07g00218 Cma-Chr7:1012179 2.17E-64 dispersed
Cma13g00885 Cma-Chr13:7158062 Cma18g00172 Cma-Chr18:873560 0 wgd
Cma13g00885 Cma-Chr13:7158062 Cma04g02695 Cma-Chr4:18244050 3.03E-144 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00885 K15283 - csv:101203848 676.781