Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00886 ATGGAAGAAACATTTTTTCCATTTCGTGGGATTAAGAATGATATGAGAGGAAGACTTCTGTGCTATAGACAGGATTGGACTGGCGGGTTTCGCACCGGTATCAGGATCTTGGCCCCAACGACGTACATATTCTTCGCTTCAGCAATTCCGGTTATATCGTTCGGGGAGCAGCTAGAAAGGAATACATATGGGACTCTAACTGCGGTACAAACTCTAGCATCAACAGCACTTTGTGGCATTATCCACTCCGTGTTCGGGGGACAGCCTCTGCTCATCCTTGGCGTTGCTGAACCAACTGTTTTGATGTATACGTTCATGTTCGACTTTGCAAAGGACCGAAAGGAACTGGGGCAGGAACTATTCTTAGCCTGGACAGGATGGGTGTGTGTGTGGACAGCCATTTTGCTTTTCTTGCTTGCTGTGTTGGGTGCATGCTCCTTGATCAATAGGTTCACACGTCTTGCTGGAGAATTGTTCGGTCTGCTAATTGCTATGCTCTTTATGCAGCAGGCGATACGTGGTGTTGTGGAGGAATTCAGCATACCCCAAAGGGAAAATCCGAATCGTGTGGCACTCCAACCTCCCTGGCTCTTTGGCAATGGAATGTTTGCATTAGTGCTATCGTTCGGGCTTCTACTAACCGCCCTTAAAAGCCGCAAGGCTAGATCATGGCGCTATGGGACTGGTTGCCTACGAGGCTTTATCGCCGATTACGGAGTTCCACTTATGGTGCTCGTATGGACAGCGTTATCTTACATTCCAGTCAATAACGTCCCACATGGGATCCCAAGAAGGCTTTTCAGTCCCAATCCATGGTCTCAGGGAGCCTACTCAAACTGGACAGTCATAAAGGAAATGTTGAGAGTGCCTCCATTGTATATAGTTGGAGCATTCGTACCAGCAACCATGATAGCAGTTCTTTACTACTTTGATCACAGTGTTGCATCTCAACTTGCCCAACAGAAAGAGTTTAATTTGAAAAAACCAGCTTCATATCATTATGATCTTCTTCTCCTAGGCTTCCTTGTTATCCTCTGTGGACTTATAGGCATACCACCTTCTAATGGTGTAATTCCTCAGTCTCCTATGCACACGAAAAGCTTAGCTACCCTTAAACATCAGCTTTTGCGGAGCAAGCTGGTAGCAGCAGCGCGACAAAGTTTCCGTAAAAATTCGAACTTAAGTCAGTTCTACCAGAACATGCAAGAGGCATATAATGAGATGCAGACTCCTTTAATTTATCAAAATCCACCAGCAGTGGGGCTGAAGGAGTTGAAAGATTCCACCATCCAACTAGCTTCAAGAACTGGATACATTGATGCACCTGTGGATGAAACTGTTTTCGACGTGGACAAAGATGTCGACGATCTTCTTCCCGTAGAAGTTAAAGAACAACGTCTCAGCAATTTGCTTCAGGCAGTAATGGTTGGTGGTTGTGTTGCTGCCATGCCTCTTTTGAAGAAGATCCCGACTTCGGTTCTTTGGGGCTACTTCGCTTTCATGGCGATCGAGAGCTTGCCCGGAAATCAATTCTGGGAAAGGATTTTACTGCTTTTCACTGCTCCGAATCGTAGATACAAGGTGTTGGAGGAATATCATGCAACTTTTCTAGAAACTGTCCCCTTCAAAACAATTGCTACTTTCACCCTGTTTCAGACAGTGTATCTGCTGATGTGTTTTGGTTTAACATGGATACCAATTGCTGGTGTTCTTTTTCCGCTGCTGATCATGCTGCTTGTCCCTGTGCGCCAGTATTTGCTCCCCAGGTTCTTCAAAGGTGCTCATCTTCAGGACTTGGATGCTGCTGAATACGAGGAAGCCCCTGCAATCGCGTTTAATCCATCCTTCGAAGATCGAATGGGAAGAACTTCCAACATTGACGATGGTGAAATACTCGATGAGATGATCACGAGAAGCCGTGGCGAGATTCGGCGTACACAGAGTTCGAAAATGACGAGCTCATCTCCAAATACGGTAGAGGGCATCAAACCTACGTACAGCCCACAGATATCATCACAGAAACTGTACAGTCCACGGATCAATGAACTGAGAAGGGAGAGGAGTTCTCTATCTCCTGGAAAAGGACCTGGCTTTAAGCTGAATTCTAGTCCTAGTCCTAGTCCAAGTCCAAGTCCAAGTCCGAGTGCAGAGCCAGGGCCAGGACCATCCTTTAGAAATTAG 2181 46.17 MEETFFPFRGIKNDMRGRLLCYRQDWTGGFRTGIRILAPTTYIFFASAIPVISFGEQLERNTYGTLTAVQTLASTALCGIIHSVFGGQPLLILGVAEPTVLMYTFMFDFAKDRKELGQELFLAWTGWVCVWTAILLFLLAVLGACSLINRFTRLAGELFGLLIAMLFMQQAIRGVVEEFSIPQRENPNRVALQPPWLFGNGMFALVLSFGLLLTALKSRKARSWRYGTGCLRGFIADYGVPLMVLVWTALSYIPVNNVPHGIPRRLFSPNPWSQGAYSNWTVIKEMLRVPPLYIVGAFVPATMIAVLYYFDHSVASQLAQQKEFNLKKPASYHYDLLLLGFLVILCGLIGIPPSNGVIPQSPMHTKSLATLKHQLLRSKLVAAARQSFRKNSNLSQFYQNMQEAYNEMQTPLIYQNPPAVGLKELKDSTIQLASRTGYIDAPVDETVFDVDKDVDDLLPVEVKEQRLSNLLQAVMVGGCVAAMPLLKKIPTSVLWGYFAFMAIESLPGNQFWERILLLFTAPNRRYKVLEEYHATFLETVPFKTIATFTLFQTVYLLMCFGLTWIPIAGVLFPLLIMLLVPVRQYLLPRFFKGAHLQDLDAAEYEEAPAIAFNPSFEDRMGRTSNIDDGEILDEMITRSRGEIRRTQSSKMTSSSPNTVEGIKPTYSPQISSQKLYSPRINELRRERSSLSPGKGPGFKLNSSPSPSPSPSPSPSAEPGPGPSFRN 726
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7162122 7168136 - CmaCh13G008860.1 Cma13g00886 306713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00886 726 PANTHER BORON TRANSPORTER 2-RELATED 1 693 - -
Cma13g00886 726 Pfam HCO3- transporter family 460 550 IPR011531 GO:0006820|GO:0016021
Cma13g00886 726 Pfam HCO3- transporter family 202 373 IPR011531 GO:0006820|GO:0016021
Cma13g00886 726 Pfam HCO3- transporter family 7 180 IPR011531 GO:0006820|GO:0016021
Cma13g00886 726 Gene3D Helical hairpin bin 18 60 - -
Cma13g00886 726 MobiDBLite consensus disorder prediction 621 645 - -
Cma13g00886 726 MobiDBLite consensus disorder prediction 621 726 - -
Cma13g00886 726 PANTHER ANION EXCHANGE PROTEIN 1 693 IPR003020 GO:0005452|GO:0006820|GO:0016020
Cma13g00886 726 MobiDBLite consensus disorder prediction 703 726 - -
Cma13g00886 726 MobiDBLite consensus disorder prediction 646 678 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00269 Cma-Chr1:1274009 Cma13g00886 Cma-Chr13:7162122 0 dispersed
Cma13g00886 Cma-Chr13:7162122 Cma14g01328 Cma-Chr14:10407572 0 dispersed
Cma13g00886 Cma-Chr13:7162122 Cma14g00951 Cma-Chr14:4928445 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00886 K24194 - csv:101203606 1334.7