Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00888 ATGAAGGATGAAGAAGACGTGGTTAGAGTAGGAATGGAAGACCCCAAAACCCCAGAAACCCTAAAAGTTCAAAGTCCTGCGATTGAAACGAGCGAGGATATTTCGGGGTTTTCTGGGTTGGCTGATTTGAGTGCGGGATTAACGGCGGAGATTCTGGTAGTTGAAAATGGCGTAGCGGTTAGTGATTGCAGTAACGAGGCTGAGATTAGCAATGTCGAATTGAGGAATGAGGAAGATGAGGAGAGAATAGATGGTTCTGAGAGGGAAATTTTGGATGCTGGTGTGGTTGCAGCAGGTGATGTTGAAGCAGACGGTGGTAATGGTGGTGAGGCTGAGAATGACCAGAAAGAAGGCAACACTGTGGAATTAGGTGGTGTGTCTACAGGTGAAAACTCGGAAGTCCCCGGAGATGGTATGCCACTTGCAATGGACTTCTCGAACATTCAGCAGGAAGAACCAGAACCTTCCAAGTCGATCGGAACAGAAGAAATGTCGAAAGAAGCTGGAGATGAAAAACAGGTTATTGAAAATGGTCAAGAGCACAAATTTTCGGTTGGTGATGTGATATGGGTCAAGACGAAAAGTCAGACATGGTGGCCTGGGAAGATATATCCTTCGGATGCAGCAGAGAGTGACGTAAGTAGCCGGGATGATAGTCTATTAGTTGGCTATTTTGGAAGCAGCCACATGACATGGTGCTCTTCATCTCAGTTGATACCCTTCGCTGATAACTTTGAGCAAATGTCTGGGAAATCCAAGTCTCGAAGCTTCCTCGGAGCCGTAGAGCAAGCCGTGGATGAGTTTGGTAGGTGTGTGAAGTTGGAGATGTCGTGTTCGTGTATTCCAGAACGAAATTACCCTTTAGAAGGTAATGGTGAATCAAAGGATACAGCTTCCCGGCGTGAGCGCAAGTCTAGTCTACTTGCTAAATATTCTATTGCTCAGTATGAACCCGAAACATTCCTAGCACGCGTTAAGGGTCTTGCAGAGACTGCTTCCCTATGTGGAGTGTTTGAGTTGAGTATCCTATACAATCAATTAGCAGCTTTTCAAAGCTCAATAGGACACGAGCAGTTACCTTTGCATCAACTCAGGGAAGCTCATGATGATGAAGACAATGAGGTGGGCAAATCAGTGAGAAAAAGCAAAGTTGGTGCTACAGTTGCAGATGAAGAACAGGTAGAAGGGGGCACACAGAGCTCGCCATTAGAGACACCATCCATAGGATCAGATGTTCTGTGCGAAAAGATGGAAGGGAAGAATGAAGATCCTAACAAGGTTCTAGATGGAAGCATGGAAGCTAGGAAAAGGAGCTCCAGAAGAATGGCAATTTCTAATGGAGGAATAGAACCAAAATCTGCAAAGAGAAATGGACATGAAAAAATTGAAGATTTTGAATCTAGTGAAATGGATTCCTCAATCAAGGGAGAGGTGATCAATCCATTAACAGATGAAATTAAGGATTCTGGTGTAGAAAACTTCGATGATGAGAGCAAAGGAACGCCAGAAAAGAGGTCTGAGACACGAGAGCGGAAGAAGAGCAAGTATTTATCTTTTCCATATATAAACTGGGGGCAGAAAGGTATGCCAGCTGAAACAGATGATATTAGAGCTCTTAAAATTTCTGGCGAAGATGCAGATGAATATGCAGTCGAGGGCCAGAATGAAACCCCATTGCTATCTAAATGCAGTGGCAAGTTCTGGAAGAAGTGGTACCGGAATATCACCAGTGGGAGCGATGTCGCTGATAATCAAGACTTGATGAGTGCATCACCAGCTGAGTTTCTCTCTGAGCTTCATTTTACTGCTGTAGATTGTCTTTATCCAAACGAAATCAGCAACTTTGATGCGGTTGCGCAGTTCTTCTCCAGGTTTAGAATTTTGATGTTTCATGATGAATCTGTCAATGGTGGCCAAAATGAGGCAATGGCTGCCGATTTATTTTTTCTTGGGGGAAAGGTGTCGGAGGTTAAGCATCCTTCCTCGACGCCTAAATCTGGGATCAAGAAAAGAAAAGGTCAGGCAATGAAATCCAAACTAATCTCTGGTGATGTGGATTTGACTGGACAACCTGAATTATGTCCTGCAGGAGATGCACAGAAAAAAAGTCCTCTGACTTCCAATGTGAAGTCAAAAAAAGATGGAGAAAGCTTGGGGAAATTGAAGACTAAATCCCTTTCTGCCTTGTCAGATGTGAACATTAACATAGATTCACCAGAGCTCGGACCTCTCTCACCCAATGGTTTATCGAAGCGGAGGAAGCGAAAGAACAATGAATCACATCCCCAGAGTAAACCAACAATGGAGATACCAGATTTAAATGGAAGCGGTACCGTATCTGGCGTGTTGGTGGATAATCGGCAGGCTGTGAGCCATGTCGTCTCCCAACAAAAGTCTGAGCCAAAGAAGAGAAGGAAACTTGGAGCTACTAAGGAGCATTCAAAGGTGTCTACTGAATTCATAGATGTGAATAACAGCAATAAACCTGGTTCGTTTTTTATTGATCTACAGGTCACAGCTCCGCAACCACTTGATGTAATTGTAGAGCAAAATAAAGTGGATTTTGCAGGAGCGCCTAACCAGTCAGTGAATTATCAGACAATTGGCCAGGATCAGAGCAAGACTGGGGGCAAAAAGCGAAAGAGGAAGGAGAAGGTTATCTTATCCTCTGATATACCTGATTTAAATCGAATGGGTATTGACATTAGTCAAGGAAAAAATTCCCAATTGACTAAACCTAAGAGGAGGAGGAGGAGGAGAAAAGGTGAAGCTAGTTTGAACCATCCAAATCCTTCTGACAGCAGATCATATATTTATAACAGAGTCGAAACTGATGGTGGAGGCTTAGGATCTTTTCTTCTTTTAAGTTTCTCTTCAGAAGCTCCCTTACCTCCCCGGGAGCAAGTTATTAGTACGTTTAGCCAGTTTGGATCATTGAAGGAATCAGAGATTCAGTTGAAAGATTCCACTGTTGAGATAGTTTTCCTCCGAAGCGCCGACGCCATGGAAGCAGTTCGGAGTTTAAAGAAGAACAACATTTTTGGCCCAACTCTTTTAAAATATCAGCTCTATCATCTCTCGGTTCCCCCCAAGACGTCAGACTCAGACCGGGCTTGCACGGCACTGGCGTATCCAGCTTCTGAGGGCACTCTGAACCCATCAAAATCAGGTGAATTAGGAAATCAAGCAGGTGAGACACCGCCTATAGAGTTTATAAGGAAGAACCTTCAGATGATGACGTCAATGTTGGAGAAGTCAGGAGACAATCTCTCCCCAGACATGAGAGCCAAATTGGAGAGCGATATTGAAGGCCTCCTCAAGAAGGTGAGTTCCATGGCGGGCCCTTCCTCAACGTAA 3357 44.18 MKDEEDVVRVGMEDPKTPETLKVQSPAIETSEDISGFSGLADLSAGLTAEILVVENGVAVSDCSNEAEISNVELRNEEDEERIDGSEREILDAGVVAAGDVEADGGNGGEAENDQKEGNTVELGGVSTGENSEVPGDGMPLAMDFSNIQQEEPEPSKSIGTEEMSKEAGDEKQVIENGQEHKFSVGDVIWVKTKSQTWWPGKIYPSDAAESDVSSRDDSLLVGYFGSSHMTWCSSSQLIPFADNFEQMSGKSKSRSFLGAVEQAVDEFGRCVKLEMSCSCIPERNYPLEGNGESKDTASRRERKSSLLAKYSIAQYEPETFLARVKGLAETASLCGVFELSILYNQLAAFQSSIGHEQLPLHQLREAHDDEDNEVGKSVRKSKVGATVADEEQVEGGTQSSPLETPSIGSDVLCEKMEGKNEDPNKVLDGSMEARKRSSRRMAISNGGIEPKSAKRNGHEKIEDFESSEMDSSIKGEVINPLTDEIKDSGVENFDDESKGTPEKRSETRERKKSKYLSFPYINWGQKGMPAETDDIRALKISGEDADEYAVEGQNETPLLSKCSGKFWKKWYRNITSGSDVADNQDLMSASPAEFLSELHFTAVDCLYPNEISNFDAVAQFFSRFRILMFHDESVNGGQNEAMAADLFFLGGKVSEVKHPSSTPKSGIKKRKGQAMKSKLISGDVDLTGQPELCPAGDAQKKSPLTSNVKSKKDGESLGKLKTKSLSALSDVNINIDSPELGPLSPNGLSKRRKRKNNESHPQSKPTMEIPDLNGSGTVSGVLVDNRQAVSHVVSQQKSEPKKRRKLGATKEHSKVSTEFIDVNNSNKPGSFFIDLQVTAPQPLDVIVEQNKVDFAGAPNQSVNYQTIGQDQSKTGGKKRKRKEKVILSSDIPDLNRMGIDISQGKNSQLTKPKRRRRRRKGEASLNHPNPSDSRSYIYNRVETDGGGLGSFLLLSFSSEAPLPPREQVISTFSQFGSLKESEIQLKDSTVEIVFLRSADAMEAVRSLKKNNIFGPTLLKYQLYHLSVPPKTSDSDRACTALAYPASEGTLNPSKSGELGNQAGETPPIEFIRKNLQMMTSMLEKSGDNLSPDMRAKLESDIEGLLKKVSSMAGPSST 1118
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7177987 7181938 + CmaCh13G008880.1 Cma13g00888 306715

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00888 1118 Coils Coil 69 89 - -
Cma13g00888 1118 MobiDBLite consensus disorder prediction 792 813 - -
Cma13g00888 1118 MobiDBLite consensus disorder prediction 735 780 - -
Cma13g00888 1118 MobiDBLite consensus disorder prediction 367 408 - -
Cma13g00888 1118 SMART PWWP_4 183 242 IPR000313 -
Cma13g00888 1118 PANTHER ALDOLASE-RELATED 748 812 - -
Cma13g00888 1118 MobiDBLite consensus disorder prediction 864 937 - -
Cma13g00888 1118 MobiDBLite consensus disorder prediction 481 512 - -
Cma13g00888 1118 MobiDBLite consensus disorder prediction 420 440 - -
Cma13g00888 1118 MobiDBLite consensus disorder prediction 686 718 - -
Cma13g00888 1118 MobiDBLite consensus disorder prediction 101 133 - -
Cma13g00888 1118 Pfam PWWP domain 186 267 IPR000313 -
Cma13g00888 1118 Gene3D - 172 276 - -
Cma13g00888 1118 PANTHER SERINE/THREONINE-PROTEIN KINASE ATM 748 812 - -
Cma13g00888 1118 PANTHER ALDOLASE-RELATED 111 741 - -
Cma13g00888 1118 PANTHER ALDOLASE-RELATED 872 1117 - -
Cma13g00888 1118 MobiDBLite consensus disorder prediction 393 407 - -
Cma13g00888 1118 SUPERFAMILY Tudor/PWWP/MBT 180 283 - -
Cma13g00888 1118 ProSiteProfiles PWWP domain profile. 185 244 IPR000313 -
Cma13g00888 1118 MobiDBLite consensus disorder prediction 420 458 - -
Cma13g00888 1118 MobiDBLite consensus disorder prediction 797 813 - -
Cma13g00888 1118 PANTHER SERINE/THREONINE-PROTEIN KINASE ATM 111 741 - -
Cma13g00888 1118 PANTHER SERINE/THREONINE-PROTEIN KINASE ATM 872 1117 - -
Cma13g00888 1118 MobiDBLite consensus disorder prediction 367 388 - -
Cma13g00888 1118 MobiDBLite consensus disorder prediction 488 512 - -
Cma13g00888 1118 MobiDBLite consensus disorder prediction 763 780 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00888 - - - mcha:111008692 1581.23
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma13g00888 Cma18g00169 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00888 Cma-Chr13:7177987 Cma14g01282 Cma-Chr14:10135848 5.20E-17 dispersed
Cma13g00888 Cma-Chr13:7177987 Cma18g00169 Cma-Chr18:851404 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g756 Blo04g00735 . Bda06g00598 . . Bpe13g00240 Bma06g00220 Bma12g01038 Cmo13g00917 . . . . . . Cpe20g00243 . . . . . . . . . . . . . . . . . . . . Csa01g00850 . Cme12g01695 . . Bda11g01653 . Bpe07g00839 Bpe15g00637 Bma03g00782 . . . . Cma13g00888 Cma18g00169 Car13g00728 Car18g00160 Cpe09g01026 . Bhi08g01607 Tan05g2010 . Lac10g0448 . . . Cla01g01299 Cam01g1430 Cec01g1465 . Clacu01g1365 Cmu01g1271 Cre01g1265 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004937 3 2 2 3 3 1 2 0 1 0 1 1 2 1 1 1 2 0 2 1 1 1 1 1 1 0 2 2 2 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g00888 Cma_Chr13 FPKM 16.239201 17.651348 17.581865 17.022156 18.765949 15.824719 17.63732 20.911554 17.91774 17.448345