Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00889 ATGGGTCTAACTTCTCTACAAGTCTGCATGGACTCCTCTGATTGGCTGCAGGGCACCATTAACGAGGAGTCTGGCATGGATTCTTCGTCGCTATCAGGGGACATGCTGTCATGTTCAAGGCCGCTGACAGAGAGGAGGCTTAGACCCCCACATGATCAAGCACTGAAATGCCCAAGATGTGACTCAACCCACACCAAATTTTGCTACTACAACAATTACAGCCTCACCCAGCCGCGTTACTTTTGCAAGACATGTCGTAGGTACTGGACCAAAGGCGGCACTCTTCGTAACATCCCTGTCGGTGGTGGCTGTCGAAAGAACAAGAAAGTTGCCACTACAAAGAAATCCAATGACCCACAACACCAACAGCCACAAAATCAACAACCCATCTCCCAAAATCACCACCAAGGCTCTTCTTCTTCTTCTGCCCATCACATTCACAACCCCACTGATCTCCATCTCTCATTTCCCGACCAAGTACAATTCCCTCATTTCAACCATCTCATTGGAACAACCCCAAGTTTCATGGACGCCAAATACACCATTGGAATGCTTGAAAGTCACCACCAGCATCACACTACTCGACCCATTGATTTCATGGACACCAAAATGGACGCCATTGTTGGGAATGCTCATTACCCTACAAACCCAGATCACTTGGCCATGGTTGGTGGGCTAGCTGGAGATCACATCGCCGCCGCCGCCGGCCATACTCTGTCGCCGAGTTTCCATGGCCTTTGCTCCCCTTATGGGCTGTCACTCGATGGGAACACCATAGGACAAGGACTGATGATTCCTTATGATCAGCATGAACCAAATGAGGAGCCAAATGCAATGGATGTGAAACCAAATACAAAGCTTCTGGCTTTGGAATGGCAAGATCAGGGATGTTCAGACAAAGTTGAATCGTATGGATACATAAATGGAATTGGGTCGTCTTGGAATGGGATGATGAATGGATATGGACCATCGACAACGAACCCATTGGTGTAA 993 48.24 MGLTSLQVCMDSSDWLQGTINEESGMDSSSLSGDMLSCSRPLTERRLRPPHDQALKCPRCDSTHTKFCYYNNYSLTQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVATTKKSNDPQHQQPQNQQPISQNHHQGSSSSSAHHIHNPTDLHLSFPDQVQFPHFNHLIGTTPSFMDAKYTIGMLESHHQHHTTRPIDFMDTKMDAIVGNAHYPTNPDHLAMVGGLAGDHIAAAAGHTLSPSFHGLCSPYGLSLDGNTIGQGLMIPYDQHEPNEEPNAMDVKPNTKLLALEWQDQGCSDKVESYGYINGIGSSWNGMMNGYGPSTTNPLV 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7183557 7185058 - CmaCh13G008890.1 Cma13g00889 306716

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00889 330 ProSiteProfiles Zinc finger Dof-type profile. 55 109 IPR003851 GO:0003677|GO:0006355
Cma13g00889 330 Pfam Dof domain, zinc finger 52 109 IPR003851 GO:0003677|GO:0006355
Cma13g00889 330 ProSitePatterns Zinc finger Dof-type signature. 57 93 IPR003851 GO:0003677|GO:0006355
Cma13g00889 330 MobiDBLite consensus disorder prediction 116 148 - -
Cma13g00889 330 PANTHER - 11 324 - -
Cma13g00889 330 MobiDBLite consensus disorder prediction 100 152 - -
Cma13g00889 330 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 11 324 IPR045174 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00889 - - - csv:101223232 528.48
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g00228 Cma13g00889 CCT
Cma10g00281 Cma13g00889 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00281 Cma-Chr10:1252523 Cma13g00889 Cma-Chr13:7183557 1.90E-32 dispersed
Cma11g00228 Cma-Chr11:1151250 Cma13g00889 Cma-Chr13:7183557 3.02E-33 dispersed
Cma13g00889 Cma-Chr13:7183557 Cma20g00463 Cma-Chr20:2233484 2.03E-37 dispersed
Cma13g00889 Cma-Chr13:7183557 Cma18g00167 Cma-Chr18:848291 4.85E-171 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g423 . Blo16g00241 . Bda15g00634 Bpe12g00514 . Bma06g00234 Bma12g01019 Cmo13g00918 . Cma10g00281 Cma11g00228 Car10g00264 Car11g00205 Sed08g0300 Cpe20g00241 Cpe04g01443 Bhi02g00056 Tan09g2004 Cmetu02g1182 . Hepe09g0293 . . Cla06g01522 Cam06g1679 Cec06g1740 Cco06g1737 Clacu06g1644 Cmu06g1592 Cre06g2403 Cone2ag0789 . Cone13ag0023 Cone19ag0032 Lsi02g00370 Csa01g00849 . Cme12g01696 Blo13g00035 . Bda11g01633 . . Bpe15g00563 Bma03g00870 Bma08g00252 . Cmo10g00299 Cmo11g00231 Cma13g00889 . Car13g00729 Car18g00159 . Cpe18g00719 . . . . . . . . . . . . . . Lsi06g01388 Csa01g00332 Chy02g02411 Cme02g01804
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008227 1 1 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 0 3 1 1 1 1 1 1 1 1 3 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36128 PF02701 zf-Dof 3.30E-33 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g00889 Cma_Chr13 FPKM 11.764327 12.236375 6.1344 5.235606 33.805763 35.829411 31.487556 0.250407 0.0 0.0