Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00890 ATGGAGAACATTCAGGATCAATGTCGGTCACAGTTTCAGCAATTTGGAAGCGATCACCGTCTTGAAAATGGAGTTGAGGCTTTAATGGCTTCCAAGACATCTGCAAACCATGATTTCTCTGATGACGGAGATTTTAACGGTCCCGATCAGGAGTCGGTAGTTTCGGATTCTGAAAGCGGCATTTCAGGGCCGAGTGTGGAGCAATTGGAATGGCGCAATGGGGATTTGGTAAAACTTGTCGAACAAGACAAGATTTACGACCTAATCGAGAGAAGATTCGTTAATGGTTTGGGAATACTTGGTCCGCAAACCACGGTCTCGGCTGTTTACAAGAATAGCCACTCGACTCATATCGGGCAAGCCCGTTTGCACGCCTTTCAGATTTACTCGCAAGCAATAGCGAAGAAAAATGGGGGTAGTGCCAATGTCCTGTACGCTTGGTTGGGTGCTTCTAAGGATCAAATCAATAACATTCTCGGCTATGGCTTTGCTCAATGCAACAAGCCCAAGAGTTCGCAGTTTCTTGGCGGTGGCGTTTATCTATCCCCTGATGCTCTTCCTCTAGAAAGCCTGGAAGATACTGTTGTTGATGAAGATGGCTTACGGCATCTATTGCTCTGCCGTGTTATATTGGGGAAAACAGAGCTTGTTCATCCTGGTTCTAGACAGAATCATCCAAGTTCTGAAGCGTTTGATTCTGGCGTTGATGATCTCTTTGCACCAAGGAAATACATAGTTTGGAGCACACACATGAACACCCACATCTTGCCTGAGTATCTAATCAGTTTTAGAACTCCTCCTCCTCCTCCTCGATCGAAGGAGGCTAAACAGCCTTCGAGAATGCCAACCTCCCCTTGGATGCCGTTTCCAACTCTGATATCTGTTCTGTCTAAGTTTCTGCCTGCTCCAGAAATTGCCATGATCAGCAAGCATCACAAAGAGCACAGGGATCATAAGATATCGAGGCATGAGCTGATCAAGCGAGTGAGGCAGATAGCGGGGGACAAGCTGTTGATACATGTAATCAAATCATTCAGGGTGCAGCAAAGTAGAAATGGAGGAAGAAATGGACAGAGAGCAGCGGGGAGTGTAGATTCACCAATCTTGTTGGAGTAA 1116 46.24 MENIQDQCRSQFQQFGSDHRLENGVEALMASKTSANHDFSDDGDFNGPDQESVVSDSESGISGPSVEQLEWRNGDLVKLVEQDKIYDLIERRFVNGLGILGPQTTVSAVYKNSHSTHIGQARLHAFQIYSQAIAKKNGGSANVLYAWLGASKDQINNILGYGFAQCNKPKSSQFLGGGVYLSPDALPLESLEDTVVDEDGLRHLLLCRVILGKTELVHPGSRQNHPSSEAFDSGVDDLFAPRKYIVWSTHMNTHILPEYLISFRTPPPPPRSKEAKQPSRMPTSPWMPFPTLISVLSKFLPAPEIAMISKHHKEHRDHKISRHELIKRVRQIAGDKLLIHVIKSFRVQQSRNGGRNGQRAAGSVDSPILLE 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7191557 7194854 + CmaCh13G008900.1 Cma13g00890 306717

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00890 371 MobiDBLite consensus disorder prediction 50 65 - -
Cma13g00890 371 Pfam RCD1-SRO-TAF4 (RST) plant domain 282 346 IPR022003 -
Cma13g00890 371 Gene3D - 74 265 - -
Cma13g00890 371 PANTHER INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO4-RELATED 7 348 - -
Cma13g00890 371 PANTHER INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO4-RELATED 7 348 IPR044964 -
Cma13g00890 371 MobiDBLite consensus disorder prediction 266 285 - -
Cma13g00890 371 MobiDBLite consensus disorder prediction 348 371 - -
Cma13g00890 371 ProSiteProfiles RST domain profile. 280 351 IPR022003 -
Cma13g00890 371 ProSiteProfiles PARP catalytic domain profile. 63 284 IPR012317 GO:0003950
Cma13g00890 371 MobiDBLite consensus disorder prediction 36 65 - -
Cma13g00890 371 Pfam Poly(ADP-ribose) polymerase catalytic domain 134 222 IPR012317 GO:0003950
Cma13g00890 371 SUPERFAMILY ADP-ribosylation 75 267 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00890 - - - csv:101222840 584.719
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00008 Cma-Chr12:34341 Cma13g00890 Cma-Chr13:7191557 3.68E-71 dispersed
Cma13g00890 Cma-Chr13:7191557 Cma16g01188 Cma-Chr16:9074450 2.19E-42 dispersed
Cma13g00890 Cma-Chr13:7191557 Cma18g00166 Cma-Chr18:839180 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g744 Blo04g00736 . . . . . . . Cmo13g00919 Cmo18g00126 . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00369 Csa01g00847 Chy12g01269 Cme12g01697 . . . Bda14g00813 . Bpe15g00636 Bma03g00783 . . . . Cma13g00890 . Car13g00730 Car18g00158 Cpe09g01028 . . . . . . . . Cla01g01297 Cam01g1433 Cec01g1467 Cco01g1458 Clacu01g1363 Cmu01g1268 Cre01g1268 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004588 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 2 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g00890 Cma_Chr13 FPKM 4.828797 4.618274 27.320004 30.967663 2.022393 1.69423 1.745477 30.738516 33.236732 32.179832