Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00893 ATGAGGAATTTGAGCTGGTTCAAGCCAATTTCCATCAATGGGAAGCCTGGGAGGAGGCTTTCCCTTGGAGAGTACGAGCGGGCTGTGTCGTGGTCTAAGTACTTGGTGTCTTCAGGAGCAGAGATAAAGGGAGAGGGAGAAGAGGAATGGAGTGCAGACATGTCTCAGTTGTTCATTGGCTTCAAACTTGCTACTGGAAGGCACAGCAGGATTTACAGAGGCGTTTATAAGCAAAGGGATGTTGCAATTAAGCTGATAAGCCAGCCTGAGGAGGATGAAAACTTGGCTAACTTTCTTGAAAATCAGTTCATTTCAGAGGTGGCATTGCTGTTTCGATTGAGACATCCCAATATCATCACTTTCATTGCAGCTTGCAAGAAACCTCCAGTTTTTTGCATAATCACGGAGTATATGGCGGGGGGCTCGTTAAGAAAGTATCTGCATCAACAGGTGCCACATTCGGTTCCGCTGAACTTGGTTCTGAAACTAGCACTCGAGATCTCGCGCGGGATGCAGTATCTTCATTCTCAGGGAATACTCCACAGAGATCTCAAGTCAGAAAACCTTTTACTTGGTGAAGATATGTGCATTAAGGTAGCTGATTTCGGTATCTCATGCTTGGAATCTCAATGCGGAAGCGCAAAGGGATTCACCGGAACATATCGATGGATGGCACCGGAAATGATCAAAGAAAAACACCATACTAAGAAAGTTGATGTTTATAGCTTTGGCATTGTCTTGTGGGAGCTCTTAACTGCATTGACACCATTTGATAACATGACTCCTGAACAGGCAGCATTTGCAGTCTGCCAGAAGAATGCAAGACCACCTCTGCCTTCAGCTTGCCCGGAAGCGTTTTGTCATCTGATCAAGAGATGCTGGTCGAAAAATCCCAACAAGCGACCGCATTTCGACGAGATTGTTTCGATTTTGGAAGCTTATATGGAGTCTTACAATGAAGATCCAGAGTTTTTCTGTCATTACGTCCCTTCATCTAGAAATACTCCATTACAATGCTTACCAAAATGTATTACAGAACAATTGTGTGCTTCCTTGAAGCCTAGGAATTCATCATCTTGA 1080 44.26 MRNLSWFKPISINGKPGRRLSLGEYERAVSWSKYLVSSGAEIKGEGEEEWSADMSQLFIGFKLATGRHSRIYRGVYKQRDVAIKLISQPEEDENLANFLENQFISEVALLFRLRHPNIITFIAACKKPPVFCIITEYMAGGSLRKYLHQQVPHSVPLNLVLKLALEISRGMQYLHSQGILHRDLKSENLLLGEDMCIKVADFGISCLESQCGSAKGFTGTYRWMAPEMIKEKHHTKKVDVYSFGIVLWELLTALTPFDNMTPEQAAFAVCQKNARPPLPSACPEAFCHLIKRCWSKNPNKRPHFDEIVSILEAYMESYNEDPEFFCHYVPSSRNTPLQCLPKCITEQLCASLKPRNSSS 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7203622 7206019 - CmaCh13G008930.1 Cma13g00893 306720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00893 359 PANTHER SERINE/THREONINE-KINASE HT1-LIKE PROTEIN 1 333 - -
Cma13g00893 359 PANTHER SERINE-THREONINE PROTEIN KINASE 1 333 - -
Cma13g00893 359 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Cma13g00893 359 CDD STKc_MAP3K-like 63 311 - -
Cma13g00893 359 SUPERFAMILY Protein kinase-like (PK-like) 46 311 IPR011009 -
Cma13g00893 359 PRINTS Tyrosine kinase catalytic domain signature 135 148 IPR001245 GO:0004672|GO:0006468
Cma13g00893 359 PRINTS Tyrosine kinase catalytic domain signature 173 191 IPR001245 GO:0004672|GO:0006468
Cma13g00893 359 PRINTS Tyrosine kinase catalytic domain signature 219 229 IPR001245 GO:0004672|GO:0006468
Cma13g00893 359 PRINTS Tyrosine kinase catalytic domain signature 238 260 IPR001245 GO:0004672|GO:0006468
Cma13g00893 359 PRINTS Tyrosine kinase catalytic domain signature 282 304 IPR001245 GO:0004672|GO:0006468
Cma13g00893 359 ProSiteProfiles Protein kinase domain profile. 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00893 359 Gene3D Phosphorylase Kinase; domain 1 47 139 - -
Cma13g00893 359 SMART serkin_6 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00893 359 Pfam Protein tyrosine and serine/threonine kinase 61 311 IPR001245 GO:0004672|GO:0006468
Cma13g00893 359 Gene3D Transferase(Phosphotransferase) domain 1 140 336 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma13g00893 Cma18g00163 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00640 Cma-Chr13:6076993 Cma13g00893 Cma-Chr13:7203622 3.82E-106 dispersed
Cma13g00893 Cma-Chr13:7203622 Cma18g00374 Cma-Chr18:2041128 1.29E-98 dispersed
Cma10g00131 Cma-Chr10:595793 Cma13g00893 Cma-Chr13:7203622 1.07E-69 wgd
Cma11g00103 Cma-Chr11:548654 Cma13g00893 Cma-Chr13:7203622 7.77E-68 wgd
Cma13g00893 Cma-Chr13:7203622 Cma18g00163 Cma-Chr18:825651 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69024 PF07714 PK_Tyr_Ser-Thr 6.30E-66 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00893 - - csv:101222762 694.115