Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00904 ATGATCACCTCCCTACCCATCTCCCCGATCGACTCGAAGCTCACAGTCGGTTATTACCAAAAAACATGTCCCAACTTTGAGAAGGTCATTCGCGAGACCGTCACGAGTAAGCAAATCACCAGTCCTGTCACTGCGGCTGGAACCCTTCGTCTCTTCTTCCACGACTGTTTTGTTGATGGTTGTGACGCTTCTGTCCTCATTGCCTCTAATTCCTTTAACAAAGCGGAGCGTGAGGCTGAAATCAATCACTCCCTTTCTGGTGACGCGTTTGATGTGGTCACCCATGCTAAGACCCACCTTGAACTTTCGTGTCCTGGTATTGTTTCTTGTGCTGATATCTTAGCTCAAGCAACACGAGATCTAGTGGTGATGGTGGGAGGGCCGTTCTATAATGTCCGTTTGGGACGAAAAGATGGAATGGTTTCGAAATTGGAACACGTGGAAGGGAACCTCCCTGAAGTGAAGCACACGGTGGATGAACTCGTGGATTTCTTTGGCCAGAGAGGCTTCAGTATCCAAGAAATGGTGGCCCTCTCCGGTGGCCACACCATTGGATTCTCTCATTGCAAGGAATTCTCCGATCGGCTGTTCAATTTCAGCGCCACCACACCCACCGACCCCGACATCTACCCCAAGTTTGCCGACAAGCTCAAGGAAATGTGCGCCAATCGCGACAAGGATACATCCATGTCAGCATTCAACGACGTGATGACACCTGGAAAATTCGACAATATGTACTACCAGAATCTCCCACGTGGACTGGGCCTGCTGGCCACCGACCATGCCTTGGTTAAGGATCCTAGGACCAAGCCGTTCGTGGACCTTTACGCCGTTAATCAGACGGCGTTTTTTCACGACTTTGCTCATGCTATGGAGAAACTCAGCGTTTTCGAAGTTAAAACGGGAAGGAAAGGAGAGGTTCGACGAAAGTGCGACCTCTTTAATTCCATCAAGACGTGA 960 49.79 MITSLPISPIDSKLTVGYYQKTCPNFEKVIRETVTSKQITSPVTAAGTLRLFFHDCFVDGCDASVLIASNSFNKAEREAEINHSLSGDAFDVVTHAKTHLELSCPGIVSCADILAQATRDLVVMVGGPFYNVRLGRKDGMVSKLEHVEGNLPEVKHTVDELVDFFGQRGFSIQEMVALSGGHTIGFSHCKEFSDRLFNFSATTPTDPDIYPKFADKLKEMCANRDKDTSMSAFNDVMTPGKFDNMYYQNLPRGLGLLATDHALVKDPRTKPFVDLYAVNQTAFFHDFAHAMEKLSVFEVKTGRKGEVRRKCDLFNSIKT 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7246240 7247199 + CmaCh13G009040.1 Cma13g00904 306731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00904 319 Gene3D Peroxidase, domain 2 152 294 - -
Cma13g00904 319 PRINTS Haem peroxidase superfamily signature 235 250 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma13g00904 319 PRINTS Haem peroxidase superfamily signature 126 138 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma13g00904 319 PRINTS Haem peroxidase superfamily signature 108 125 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma13g00904 319 PRINTS Haem peroxidase superfamily signature 174 189 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma13g00904 319 PRINTS Haem peroxidase superfamily signature 45 59 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma13g00904 319 PRINTS Plant peroxidase signature 23 42 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma13g00904 319 PRINTS Plant peroxidase signature 47 67 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma13g00904 319 PRINTS Plant peroxidase signature 233 248 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma13g00904 319 PRINTS Plant peroxidase signature 126 141 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma13g00904 319 PRINTS Plant peroxidase signature 249 266 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma13g00904 319 PRINTS Plant peroxidase signature 107 117 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma13g00904 319 PRINTS Plant peroxidase signature 289 302 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma13g00904 319 PRINTS Plant peroxidase signature 88 101 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma13g00904 319 PRINTS Plant peroxidase signature 173 185 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma13g00904 319 Gene3D - 17 315 - -
Cma13g00904 319 Pfam Peroxidase 32 278 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma13g00904 319 CDD secretory_peroxidase 13 314 IPR033905 GO:0004601|GO:0042744
Cma13g00904 319 SUPERFAMILY Heme-dependent peroxidases 14 315 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cma13g00904 319 ProSitePatterns Peroxidases proximal heme-ligand signature. 174 184 IPR019793 -
Cma13g00904 319 ProSitePatterns Peroxidases active site signature. 45 56 IPR019794 GO:0004601
Cma13g00904 319 PANTHER PEROXIDASE 41 10 319 - -
Cma13g00904 319 PANTHER - 10 319 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma13g00904 319 ProSiteProfiles Plant heme peroxidase family profile. 13 315 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01161 Cma-Chr11:6725930 Cma13g00904 Cma-Chr13:7246240 5.70E-154 dispersed
Cma18g00396 Cma-Chr18:2168011 Cma13g00904 Cma-Chr13:7246240 1.84E-90 dispersed
Cma10g00148 Cma-Chr10:676861 Cma13g00904 Cma-Chr13:7246240 5.61E-152 wgd
Cma11g00115 Cma-Chr11:619576 Cma13g00904 Cma-Chr13:7246240 4.53E-135 wgd
Cma13g00904 Cma-Chr13:7246240 Cma14g00629 Cma-Chr14:3113042 4.75E-141 wgd
Cma13g00904 Cma-Chr13:7246240 Cma18g00148 Cma-Chr18:760016 0 wgd
Cma13g00904 Cma-Chr13:7246240 Cma04g02725 Cma-Chr4:18364076 6.84E-134 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00904 K00430 - csv:101220163 544.658