Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00905 ATGGTTGGCCATGGCAATCACAGGTTGAAACTCTCCATCTTCCACCACCGATCTTCGTTGGACTCGAAACCTGAACGGCCGGTAGAGTATCCCAGAGAGTACCTCTGCGAAATTTCCAAGTCGTTAATGGCGGATCCGGTTGTCGTCTCCTCTGGTCAGACGTTCGAGCGCCTCTGTGTTCAAGTTTGTCAAGAATTGGGGTTTTCGCCGAAGCTAGAAGATGGGTCGAGGCTGGATTTCACCTCTGTTATAACCAACAGAAACATGAGATTCACCATTCTCAAATGGTGCGATGACAACGGAATCGAACACCCACGACCCCCTCAGTACACCTTTATTGAACTCGTTGTTCGTCAATTAATGGAGAAGGAGAGACAAGAGAATCGATTCGAGGCTTCTGATAGCGAGTTGTTGAGAGGCGTCGCCGATAAACCGCCGGGAGTTGCAGTTCATGCGACCACGGAGGTTGGGTTCCGAGTCAACCGATTTCAACTCAACTCGCCGCCGGAAAGGGAGGAGATCGTACGTGAAAGTACTATTTTGCCCTTCAAGACGCAACCCTCTTGTTACGCCGCTCATTCTTCGTCCTCTTCGAACTTCGACAGAGGATGCTCCGATTCGTATACGCCAAATTCAGAAGAGGAATCTCGTCTCATCATGAAATTCAGAAGCGGCGATGAATTCGAACAACAAGAAGGAGTGATTTCCCTAAGAAAATTGACCAAATCCAACGAATCAACTAGGGTTTCTATATGCACAAAGGAATTCCTCGCCGCGCTACATCCTCTGGTTTCATCCAGATCTACAAATATCCAGATCAATGCCGTTGCTTCCGTCGTGAATCTCTCCCTCGAGAAATCGAACAAATTAAAGATCCTACGAGCAGGATTCGTTCCGTCATTAATCGACGTTTTAGACAGCGGATACGCAGAATCTCAAGAACACGCAGCCGGTGCTCTGTTCAGTTTATCATTAGAGGACGAGAACAAAATGGCCATTGGAATTCTCGGCGCGTTACCGGTACTGATGAACACACTCCGATCCGAGAGTGAGCGGACGAGGAACGATTCGGCTCTTTGTTTGTACCATTTGACTCTAAACCCTAGCAACCGTGTGAAACTAGTGAAACTCGGCGCCGTTCCAATACTTCTATCGTTGACGAGAATCGAAGGCTCTGCGAGCCGAATCCTGCTGGTTCTATGCAATCTCTCCGTCTGTGCCGACGGAAGATCGGCGATGCTGGATGCGAATGCGGTGGATTGTTTGGTCGGGATGTTGAGGGAGAAAGAGATGGGTTCCGAGTCGACTCGGGAGAATTGTGTAGTTGCGCTGCACGCATTGAGTCAAGGAGGATTCCGATTCAAGGGATTGGCGAAGGCGGCCGGCGCGGTAGAGGTTCTAAGAGAGGTTGAAGAAAGGGGAAGCGAGAGGGCGCGGGAGAAGGCCAAGAGGATCTTGGAGATGATGAGAACGGGCGGGAGCGGTTCCGTTGAGATTGAAGGCGTCCGCCGACATGGTCTCGACGCCGGTGAAGTCAGCTGGACCGGCCGGGCTGGTACTGCCTTGAACCGGTATTCTACCAATACTACTAAGTTTTGA 1599 50.47 MVGHGNHRLKLSIFHHRSSLDSKPERPVEYPREYLCEISKSLMADPVVVSSGQTFERLCVQVCQELGFSPKLEDGSRLDFTSVITNRNMRFTILKWCDDNGIEHPRPPQYTFIELVVRQLMEKERQENRFEASDSELLRGVADKPPGVAVHATTEVGFRVNRFQLNSPPEREEIVRESTILPFKTQPSCYAAHSSSSSNFDRGCSDSYTPNSEEESRLIMKFRSGDEFEQQEGVISLRKLTKSNESTRVSICTKEFLAALHPLVSSRSTNIQINAVASVVNLSLEKSNKLKILRAGFVPSLIDVLDSGYAESQEHAAGALFSLSLEDENKMAIGILGALPVLMNTLRSESERTRNDSALCLYHLTLNPSNRVKLVKLGAVPILLSLTRIEGSASRILLVLCNLSVCADGRSAMLDANAVDCLVGMLREKEMGSESTRENCVVALHALSQGGFRFKGLAKAAGAVEVLREVEERGSERAREKAKRILEMMRTGGSGSVEIEGVRRHGLDAGEVSWTGRAGTALNRYSTNTTKF 532
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7247896 7249494 - CmaCh13G009050.1 Cma13g00905 306732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00905 532 SUPERFAMILY ARM repeat 222 486 IPR016024 -
Cma13g00905 532 SMART arm_5 406 449 IPR000225 GO:0005515
Cma13g00905 532 SMART arm_5 285 325 IPR000225 GO:0005515
Cma13g00905 532 SMART arm_5 367 405 IPR000225 GO:0005515
Cma13g00905 532 SMART arm_5 326 366 IPR000225 GO:0005515
Cma13g00905 532 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 104 IPR013083 -
Cma13g00905 532 Gene3D - 215 393 IPR011989 -
Cma13g00905 532 Gene3D - 394 493 IPR011989 -
Cma13g00905 532 SUPERFAMILY RING/U-box 16 107 - -
Cma13g00905 532 ProSiteProfiles U-box domain profile. 29 103 IPR003613 GO:0004842|GO:0016567
Cma13g00905 532 PANTHER U BOX DOMAIN-CONTAINING 1 496 - -
Cma13g00905 532 SMART Ubox_2 33 96 IPR003613 GO:0004842|GO:0016567
Cma13g00905 532 CDD RING-Ubox 35 71 - -
Cma13g00905 532 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 1 496 - -
Cma13g00905 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 296 333 IPR000225 GO:0005515
Cma13g00905 532 Pfam U-box domain 31 100 IPR003613 GO:0004842|GO:0016567
Cma13g00905 532 Pfam Armadillo/beta-catenin-like repeat 327 365 IPR000225 GO:0005515
Cma13g00905 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 337 379 IPR000225 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00905 Cma-Chr13:7247896 Cma01g00596 Cma-Chr1:3130763 1.21E-41 dispersed
Cma10g00149 Cma-Chr10:682222 Cma13g00905 Cma-Chr13:7247896 0 wgd
Cma11g00188 Cma-Chr11:963788 Cma13g00905 Cma-Chr13:7247896 0 wgd
Cma13g00905 Cma-Chr13:7247896 Cma15g00312 Cma-Chr15:1439680 4.24E-141 wgd
Cma13g00905 Cma-Chr13:7247896 Cma18g00146 Cma-Chr18:754216 0 wgd
Cma13g00905 Cma-Chr13:7247896 Cma04g02726 Cma-Chr4:18365399 3.00E-146 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00905 - - csv:101221183 858.981