Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00912 ATGGCGCGAGCTGATACGGCGGGGAGAAAAAGTAAATCCAAAGGCGAAATAAACACCGGCGTTGTTACGACAGCTGATGTTAAAGCAAGGGGGGGGAAACAGAACAAACCTCCCCTCTTATTCTCTCTTTTCTTCTTTCTTCACTACTCCGTCCAAAAACCAGCAAAGAAAGGACTCCATACCTCACTGATAATGGAAGACTCTGAGAAATTGACGGCCCTGAAGAAGGCCTACGCCGATATAATCCTTAATACGGCGAAAGAGGCGGCGGCGCGTATTATGGTTTCAGAAAGGAACGCTATTCGGTTTCAGCAGGAGCTGTCCACTACTAAAGATGAGGCGTTTCGGATACTGCTTAGACTTAAGCAAATGCTGGATTCTAAGGCCAGTGAGGCAGAAATGGTGTCTTTAAACCAAAAGAAAAAGATCGAAGAGCTTGAAGCCCAGCTTGAGGAAGCTGAGGACATAGTGAGGGAACTTAGAGCTCAGTTGCAGGACGTTCAAGATGAATTGGAACATGTGAGGAACAAAAACGTAGAGCCCCTAGATGAGCAAAATTTGGCCGGTAACGTTGCAACTCGAGGGGACTTGCCAAACTCACATGAGAGGATTGCACCTTGTAACATAAGTTCAACTTTAAATGGGACATGCCATGACGACAGTTGGCCTGAAAGTAAGAATGACTTGCAGATGGATAATGGCCAAGTTCATGGGGATTTTACCTCCATGGTGATGAGAAGCAAAGAACCTGAGCTTTACAGAAATGGCTGCACTCAGAGAGTACGTGCATTTGAAAGAAAATTGTTCGATGGAAAAGTCTGTTCGACTGGACAAGCTGAAGATGTCAAGAATAGGGTATGCAATATGGGTGAAGAAGAGGGTAAACTGATGTGTAAAACAAACATTACCAAGGCTGATAATGTCTGTGGAGAAAGGAAGAATTCTAATGAGATCAAGACATTGCCTAATCTATTAAGTAGGGATACTCAAGTTCCAATCATTAAATCCCTCCGTCGAAAAAGAAAACGAGCTACTAGATACAACAAAAAGAAAACTTTACCCATTTTTGATGACATTGCTAAACAATGCAACTCGCCTGATCTTCACTGCTCAGAAAGTCCTTCAGTGTATAACGATGGTACCGGGAAATGTCTGTCACAAAATGAAATTGATAGTCAGGATGGTTTAATTTTGCTCTCTACCCCTGTACTGTCTGAAATTAATGAAATGTCAACACCTTCGAGTTGTCCCGACGACAGTGAGGGAGGTGATGCAGTAATAAATGATTGTCCTATTAGGAACGTGACAGACTACGATACAGCAGCTGTAGGTAAATCGGACTTCACTAGCCAGGAAAGTTTATGTGGGGAGAATTTGGAGGCTTCTGCTTATAAAGTAGAGGTTGATCCAGTTAAGGAGTCATCAGTTAAGTCGGACGTGAAAGACTCCGACGTAGTTGATGAGATTCCTAGTCAACATTCAAATAATAAAGTTCTCATGTATACATTCCGAAGAAAGCGAAAGAAGGAATCTTTGAGCAGCCCTGATGGTAAATCACCCATTGATGAAAGCATATCAAAGAAAAGGATGAAGGATAAACAAAGTGCATCGTCGGAATCAGACAAGTTTAGCTTAATGACAGAATCATCTCGGGATAACCGACGGTTAGCACAGGTTGCTCGACAGAACTCTGGCTGCCCTGCAATTCATAATTGTTGCTTGAGAAATAAAATCAGCTGCAACAAAAAAGAGAACGCTGAATGGGCAAGTGAAGTGGTTTTCCAAGCAAGTACCACAGGCCATGAGCAAGTACCATTTGGGTGCTGGTGCTGGTTCTTCGCATTTCTAAGCAAATCGAGCTCGTCGAACTCAGTTTTCGTGAGCACTGAGGTCTGTGACGATCAAAGCTTAGCTGAAAGTTCGGACGGAGGAGATCGGAGAAACGTCGAGGAATCGGTGAAAATGGGAGCAGCGAGTAAAGTGGGCGATTGGGCGTTCAAAGCCTTTACCGCCGGTCTAGGTGTCGCCACCATTTACCTCACTGCTACCTTCTCAGTCAACGTCTACAGAGGATTGTCTTGGCACAAAGCTCAATCCAAAATCAACGACAACAATACCAACGACGAGGCTACATAA 2136 43.87 MARADTAGRKSKSKGEINTGVVTTADVKARGGKQNKPPLLFSLFFFLHYSVQKPAKKGLHTSLIMEDSEKLTALKKAYADIILNTAKEAAARIMVSERNAIRFQQELSTTKDEAFRILLRLKQMLDSKASEAEMVSLNQKKKIEELEAQLEEAEDIVRELRAQLQDVQDELEHVRNKNVEPLDEQNLAGNVATRGDLPNSHERIAPCNISSTLNGTCHDDSWPESKNDLQMDNGQVHGDFTSMVMRSKEPELYRNGCTQRVRAFERKLFDGKVCSTGQAEDVKNRVCNMGEEEGKLMCKTNITKADNVCGERKNSNEIKTLPNLLSRDTQVPIIKSLRRKRKRATRYNKKKTLPIFDDIAKQCNSPDLHCSESPSVYNDGTGKCLSQNEIDSQDGLILLSTPVLSEINEMSTPSSCPDDSEGGDAVINDCPIRNVTDYDTAAVGKSDFTSQESLCGENLEASAYKVEVDPVKESSVKSDVKDSDVVDEIPSQHSNNKVLMYTFRRKRKKESLSSPDGKSPIDESISKKRMKDKQSASSESDKFSLMTESSRDNRRLAQVARQNSGCPAIHNCCLRNKISCNKKENAEWASEVVFQASTTGHEQVPFGCWCWFFAFLSKSSSSNSVFVSTEVCDDQSLAESSDGGDRRNVEESVKMGAASKVGDWAFKAFTAGLGVATIYLTATFSVNVYRGLSWHKAQSKINDNNTNDEAT 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7289414 7295357 - CmaCh13G009120.1 Cma13g00912 306739

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00912 711 MobiDBLite consensus disorder prediction 506 550 - -
Cma13g00912 711 Coils Coil 129 177 - -
Cma13g00912 711 MobiDBLite consensus disorder prediction 506 538 - -
Cma13g00912 711 MobiDBLite consensus disorder prediction 470 491 - -
Cma13g00912 711 PANTHER - 65 562 - -
Cma13g00912 711 MobiDBLite consensus disorder prediction 470 488 - -
Cma13g00912 711 PANTHER OS02G0580700 PROTEIN 65 562 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00912 - - - cmo:103483170 782.711
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma13g00912 Cma18g00142 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00912 Cma-Chr13:7289414 Cma15g00298 Cma-Chr15:1397193 6.57E-38 wgd
Cma13g00912 Cma-Chr13:7289414 Cma18g00142 Cma-Chr18:716952 0 wgd
Cma13g00912 Cma-Chr13:7289414 Cma04g02740 Cma-Chr4:18429884 4.39E-40 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g670 . . Bda06g00570 . Bpe12g00572 . . Bma12g01020 Cmo13g00939 . . . . . . . . . . . . . . . . . . . . . . . Cone16ag0132 . . . . Chy12g01303 Cme12g01728 . Blo15g00285 . . . . . . . . . Cma13g00912 Cma18g00142 Car13g00752 Car18g00136 Cpe09g01049 . . . . . . . . Cla01g01402 Cam01g1464 Cec01g1507 . Clacu01g1490 Cmu01g1384 Cre01g1300 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005076 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g00912 Cma_Chr13 FPKM 8.847379 9.596783 10.583591 9.155912 10.123301 8.699933 9.27841 11.156563 11.367594 10.226298