Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00913 ATGGCGCTATCACCGTATTTGTCCGTGCCGAATCATCTTGAAATTTCTACAACGTTTCAGCAGCGGTATTTGCTGTCTCAACAACTTCCATTTCTCTCAAACCGTTCCAATTTCAGTGTTCGCCGTAGATTTTTCTCAGATAACTGGAGCTTGTTCTCCGACGTTGGGAAGTGTAGAGCGAAGCCGAAGGATCTCGTTCTTGGAAATCCGTCGGTAATTGTTGAGAAAGGCAAGTACAGCTATGACGTTGAAACCCTAATTAATAAGCTCAGTAGCCTCCCGCCTCGAGGCAGCATAGCACGTTGCCTCGATATCTTTAAGAATAGGCTTTCGCTCAATGACTTCAGCTTGGTTTTTAAGGAATTCGCGGCGCGCGGGGACTGGCAACGTTCGTTACGCCTCTTCAAATACATGCAGCGTCAGATATGGTGCAAGCCGAACGAGCACATCTATACCATCATGATCAGCTTGCTCGGCCGCGAAGGATTGCTAGAGAAATGTAGCGAGATATTCGATGAAATGGCGAGCCAGGGCGTAATACGTAGCGTATTTTCTTATACCGCTTTGATAAATGCCTACGGGCGCAATGGTCAGTACGAAATCTCACTTGAACTTCTTGAAAGGATGAAAAGAGATAGAGTGTCGCCTAATATATTGACTTACAATACCGTGATAAATGCATGCGCTAGAGGTGATTTAGATTGGGAGGGATTGTTGGGATTGTTTGCCGAGATGAGGCATGAAGGGGTTCAACCTGATCTTGTTACCTATAATACTTTGCTTAGTGCATGTGCTGCCCGCAGTTTAGGCGATGAGGCAGAGATGGTCTTCAAGACTATGATAGAAGGAGGGATAGTCCCTGAGATAACAACATATAGTTATATTGTCGAGACATTTGGAAAATTGGGTAAGCTCGAGAAAGTTGCTATGCTGCTAAAAGAAATGGAGTCCGAAGGGTATTTGCCCGATATATCATCCTACAATGTGTTAATAGACGCACATGCAAAATCCGGGTCGATTAAGGAGGCAATGGACGTGTTTAAGCAGATGCAAGCTGCAGGATGTGTGCCAAATGCATCCACTTATAGCATTCTATTGAATTTATATGGAAAGCATGGGAGGTATGATGATGTTCGAGAGCTTTTTCTTGAAATGAAAGAGAGCAGTGCCGAGCCAGATGCAACTACTTACAACATTCTCATTCGAGTATTTGGCGAGGGTGGATACTTCAAGGAGGTTGTAACTCTGTTTCATGATTTGGTGGAGGAGAAGATTGACCCAAATATGGAGACATACGAGGGCTTAGTATTTGCTTGTGGGAAGGGGGGGCTGCACGAGGATGCCAAGAAAATTTTACTTCACATGAACGAGAAAGGAATGGTTCCAAGTTCTAAGGCATATGGTGGACTGATTGAAGCATACGGACAGGCTGCATTGTATGATGAAGCTCTTGTTGCCTTTAACACAATGAACGAAGTGGGAAGTAAGTCAACTGTTGATACCTATAATTCGCTAATTCACACATTCGCTAGGGGTGGACTCTACAAGGAGCTTGAAGCAATCATATCGAGAATGGGAGAGTCTGGCATTTCAAGGAATGCAAAGTCATTTAGTGGTATTATTGAATGTTACAGGCAAAGTGGTCAGTTTGAAGAAGCTATAAAGGCCTTTGTTGAGATGGAAAAAATGAGATGTAAACCTGATGAGCAGACACTTGAGGCAGTTTTAGGTGTTTATTGCTTTGCAGGTCTTGTAGATGAGAGCAAGGAGCAGTTTCATGAAATTAAAGCTTCAGGAATAGTGCCTAGTGTATTGTGCTACTGCATGATGCTGGCAGTTTATGCCAAGAATGCCAGGTGGGATAATGCCTATGAGTTACTCGATGAAATGATTAAAAACAGGGAATCTGGTATTCATCAAGTCATTGGCCAGATGATCAAGGGAGGTTACGATGATGATTCTAATTGGCAGATGGTTGAGTATGTTTTTGACAAACTTAACGCTGAAGGGTGTGGATTGGGAATGAGATTTTACAATACACTGCTAGAAGCACTTTGGTGGCTTGGGCAGAAAGGACGTGCTGCAAGGGTTCTCACTGAAGCAACAAAACGAGGCCTTTTCCCTGAACTTTTCCGCAAAAGCAAGCTTGTGTGGTCTGTGGATGTCCACAGAATGTGGGAAGGCGGTGCATATACGGCTATATCTCTTTGGGTTAACAAAATGAATGAAATGCTTATGGATGGGGAGGAGCTGCCTCAGGTTGCAGCTGTAGTAGTTGGGAGGGGGTGGCTGGAGAAGGACACAACCGCACAAAACTTGCCTATCCCAAGGGCCGTCTATTCATTCCTGCAGGATAATGTGTCGTCATCCTTCACTTTTCCTGGGTGGAACAACGGTCGAATCGTCTGCCAACCGTCTCAACTGAAGCAGCTTCTCGCAGACACAGAAGCATCATCTAGTGAAATTATTACTCTAAATAACTCCCCATTAAATCTTCCAGAAGCGAAGATATCCAGATCTGGTATAAGCAATGACAAATACGAAGATGTTGATTCTAAATCAAGTAACAGGACGGGAACTGAGCTTCTGACTGCAACTGTTTGA 2604 44.05 MALSPYLSVPNHLEISTTFQQRYLLSQQLPFLSNRSNFSVRRRFFSDNWSLFSDVGKCRAKPKDLVLGNPSVIVEKGKYSYDVETLINKLSSLPPRGSIARCLDIFKNRLSLNDFSLVFKEFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLEKCSEIFDEMASQGVIRSVFSYTALINAYGRNGQYEISLELLERMKRDRVSPNILTYNTVINACARGDLDWEGLLGLFAEMRHEGVQPDLVTYNTLLSACAARSLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDISSYNVLIDAHAKSGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYDDVRELFLEMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVEEKIDPNMETYEGLVFACGKGGLHEDAKKILLHMNEKGMVPSSKAYGGLIEAYGQAALYDEALVAFNTMNEVGSKSTVDTYNSLIHTFARGGLYKELEAIISRMGESGISRNAKSFSGIIECYRQSGQFEEAIKAFVEMEKMRCKPDEQTLEAVLGVYCFAGLVDESKEQFHEIKASGIVPSVLCYCMMLAVYAKNARWDNAYELLDEMIKNRESGIHQVIGQMIKGGYDDDSNWQMVEYVFDKLNAEGCGLGMRFYNTLLEALWWLGQKGRAARVLTEATKRGLFPELFRKSKLVWSVDVHRMWEGGAYTAISLWVNKMNEMLMDGEELPQVAAVVVGRGWLEKDTTAQNLPIPRAVYSFLQDNVSSSFTFPGWNNGRIVCQPSQLKQLLADTEASSSEIITLNNSPLNLPEAKISRSGISNDKYEDVDSKSSNRTGTELLTATV 867
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7296812 7304092 + CmaCh13G009130.1 Cma13g00913 306740

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00913 867 Pfam PPR repeat 606 633 IPR002885 -
Cma13g00913 867 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 533 567 IPR002885 -
Cma13g00913 867 PANTHER PLASTID TRANSCRIPTIONALLY ACTIVE CHROMOSOME 2-LIKE PROTEIN 33 828 - -
Cma13g00913 867 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 147 181 IPR002885 -
Cma13g00913 867 Pfam Pentacotripeptide-repeat region of PRORP 481 594 IPR033443 -
Cma13g00913 867 Gene3D Tetratricopeptide repeat domain 471 654 IPR011990 GO:0005515
Cma13g00913 867 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 182 216 IPR002885 -
Cma13g00913 867 Pfam PPR repeat family 322 367 IPR002885 -
Cma13g00913 867 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 498 532 IPR002885 -
Cma13g00913 867 ProSiteProfiles Smr domain profile. 720 809 IPR002625 -
Cma13g00913 867 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 253 287 IPR002885 -
Cma13g00913 867 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 568 602 IPR002885 -
Cma13g00913 867 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 358 392 IPR002885 -
Cma13g00913 867 SMART SMR_2 717 806 IPR002625 -
Cma13g00913 867 Pfam Pentatricopeptide repeat domain 416 476 IPR002885 -
Cma13g00913 867 Pfam Pentatricopeptide repeat domain 170 228 IPR002885 -
Cma13g00913 867 Pfam Pentatricopeptide repeat domain 241 301 IPR002885 -
Cma13g00913 867 Pfam Pentatricopeptide repeat domain 373 406 IPR002885 -
Cma13g00913 867 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 217 252 IPR002885 -
Cma13g00913 867 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 428 462 IPR002885 -
Cma13g00913 867 Gene3D Tetratricopeptide repeat domain 353 439 IPR011990 GO:0005515
Cma13g00913 867 Gene3D Tetratricopeptide repeat domain 91 233 IPR011990 GO:0005515
Cma13g00913 867 Gene3D Tetratricopeptide repeat domain 234 351 IPR011990 GO:0005515
Cma13g00913 867 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 323 357 IPR002885 -
Cma13g00913 867 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 288 322 IPR002885 -
Cma13g00913 867 TIGRFAM PPR: pentatricopeptide repeat domain 361 394 IPR002885 -
Cma13g00913 867 TIGRFAM PPR: pentatricopeptide repeat domain 291 324 IPR002885 -
Cma13g00913 867 TIGRFAM PPR: pentatricopeptide repeat domain 396 428 IPR002885 -
Cma13g00913 867 TIGRFAM PPR: pentatricopeptide repeat domain 536 569 IPR002885 -
Cma13g00913 867 TIGRFAM PPR: pentatricopeptide repeat domain 150 180 IPR002885 -
Cma13g00913 867 TIGRFAM PPR: pentatricopeptide repeat domain 255 287 IPR002885 -
Cma13g00913 867 TIGRFAM PPR: pentatricopeptide repeat domain 501 533 IPR002885 -
Cma13g00913 867 TIGRFAM PPR: pentatricopeptide repeat domain 184 218 IPR002885 -
Cma13g00913 867 TIGRFAM PPR: pentatricopeptide repeat domain 606 633 IPR002885 -
Cma13g00913 867 TIGRFAM PPR: pentatricopeptide repeat domain 326 359 IPR002885 -
Cma13g00913 867 TIGRFAM PPR: pentatricopeptide repeat domain 220 253 IPR002885 -
Cma13g00913 867 PANTHER PLASTID TRANSCRIPTIONALLY ACTIVE CHROMOSOME 2-LIKE PROTEIN 33 828 - -
Cma13g00913 867 MobiDBLite consensus disorder prediction 846 867 - -
Cma13g00913 867 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 603 633 IPR002885 -
Cma13g00913 867 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 393 427 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00913 - - - mcha:111008838 1580.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00913 Cma-Chr3:6612803 Cma13g00913 Cma-Chr13:7296812 8.25E-07 dispersed
Cma04g02824 Cma-Chr4:18890164 Cma13g00913 Cma-Chr13:7296812 8.91E-16 dispersed
Cma07g00942 Cma-Chr7:4528713 Cma13g00913 Cma-Chr13:7296812 1.31E-06 dispersed
Cma13g00913 Cma-Chr13:7296812 Cma17g01027 Cma-Chr17:7442139 3.89E-88 dispersed
Cma14g00609 Cma-Chr14:3023265 Cma13g00913 Cma-Chr13:7296812 7.71E-17 dispersed
Cma17g01257 Cma-Chr17:8567327 Cma13g00913 Cma-Chr13:7296812 5.52E-15 dispersed
Cma13g00913 Cma-Chr13:7296812 Cma08g00477 Cma-Chr8:2685312 1.65E-87 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g622 . . . . Bpe12g00529 . . . Cmo13g00940 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00101 Csa01g00580 Chy12g01516 Cme12g01962 . . . . . . . . Sed08g2099 . . Cma13g00913 . Car13g00753 . . . Bhi08g01121 Tan05g2402 Cmetu12g1770 . . . . Cla04g01173 Cam04g1230 Cec01g1741 Cco01g1787 Clacu04g1257 Cmu04g1236 Cre01g1531 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008894 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g00913 Cma_Chr13 FPKM 4.044804 4.454153 7.51629 7.97902 45.913265 48.769909 46.670593 6.341197 5.682049 6.824929