Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00919 ATGTTTCTCCTCTTCAGTAGTCTAGAGAACATAAGCTCTGCTCAGGGACAGCTTCACCACAACACAACTACAGGGATGTGGACGGGAGCAGCTTCGATGGCGAGTTTGTGGGTGGCTTCTGGTCCAACAATTGCGAGCTTCATGTTTGCTTGGGCTATGATTCAACAATACTGCCCACGAGCAGTTGTTCGATTCTTTCAAAAATACTGGAGTAGACTCATGAATTACTTCCATCCTTACATCCAGATATCAATCCATGAGTTTGCTGGCGAACGCCTCAAGAGTAGTGAAGCATTCACTGCTATTGAATCATATCTCAGCAAGAATTCGTCCAACACTGCCAAAAGACTCAAAGCGGAGATAGGTAAAGATAGCACCAACTTGGTGTTCAGCATGGATGATCATGAGAAGGTGACTGACGAATTTCAAGGAGTGAAAGTATGGTGGGTTTTAAACAGAACAGGTTCATCAACAAATTCTGACAACTCGTATAGTCCTGACAGGAGATACTATTCACTCACTTTCCATAAGAAGCACAGAAGTTTAGTTACAGAACCATACTTGAAGCATGTCTTGAGCGAAGGGAAAGAAATCCGAGTAAGAAACAGGCAAAGGAAGCTTTACACGAATGGTTCAGGTGGAAGATGGAGTTACCACCACACTATGTGGAGCCACATAGTATTTGAGCACCCTGCAACATTTGACACAATAGCGATGGAAGCAGAGAAAAAGCAGGAGATTATAGATGATTTGCTGACCTTCACTAGCAGTAAGGATTTTTATGCTCGAATTGGGAAGGCCTGGAAACGTGGGTATCTACTATTTGGTCCGCCAGGGACAGGGAAATCAACTATGATTGCTGCAATAGCCAATCTACTAAACTATGATATCTATGACTTGGAACTCACAGCAGTAAAGAACAACACAGAGCTTCGGAAGCTTTTGATTGAGACTACAAGTAAATCCATAATTGTGATTGAGGACATTGACTGCTCACTCGATCTTACGGGGCAGAGGAAGAAGAAAGAAAAGAAGTCTGAGGACGATGAGAAAGAAAAACCCCCCAAGGAATCTTCCAACAAAGAAGATGATACCAGCAGCAAAGTCACTCTCTCTGGATTGTTGAACTTCATCGATGGAATATGGTCAGCCTGTGGAGGGGAAAGACTAATCATTTTCACAACCAATTATGTGGAGAAGCTTGATCCAGCCCTCATCAGAACTGGTCGGATGGACAAACATATTGAGCTTTCTTATTGCAGTTTTGAGTCATTCCTAGTGCTGGCAAAAAATTACCTGAATCTTGAAACTCATCCGCTATTTGATCAAATCAAAGAACTGATGGAAGATGTCAAAATCACACCTGCTGACGTTGCAGAGAACCTCATGCCCAAGTCTCCAAAAGATGACATTGAGAAACGTCTTCTCAAATTGATTCAAACTCTACAAGGGGCAAAGGAAGCAGCGATCATTAAGGAATCTCAAGAAGTAAGTACAGCGGGATCAACCATAACTGATCTACAGTTACAAACTGAAGGCTCATCTTCAAGTTGA 1554 42.54 MFLLFSSLENISSAQGQLHHNTTTGMWTGAASMASLWVASGPTIASFMFAWAMIQQYCPRAVVRFFQKYWSRLMNYFHPYIQISIHEFAGERLKSSEAFTAIESYLSKNSSNTAKRLKAEIGKDSTNLVFSMDDHEKVTDEFQGVKVWWVLNRTGSSTNSDNSYSPDRRYYSLTFHKKHRSLVTEPYLKHVLSEGKEIRVRNRQRKLYTNGSGGRWSYHHTMWSHIVFEHPATFDTIAMEAEKKQEIIDDLLTFTSSKDFYARIGKAWKRGYLLFGPPGTGKSTMIAAIANLLNYDIYDLELTAVKNNTELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKEKKSEDDEKEKPPKESSNKEDDTSSKVTLSGLLNFIDGIWSACGGERLIIFTTNYVEKLDPALIRTGRMDKHIELSYCSFESFLVLAKNYLNLETHPLFDQIKELMEDVKITPADVAENLMPKSPKDDIEKRLLKLIQTLQGAKEAAIIKESQEVSTAGSTITDLQLQTEGSSSS 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7318669 7320222 + CmaCh13G009190.1 Cma13g00919 306746

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00919 517 Pfam ATPase family associated with various cellular activities (AAA) 273 418 IPR003959 GO:0005524|GO:0016887
Cma13g00919 517 CDD AAA 269 419 - -
Cma13g00919 517 Coils Coil 468 488 - -
Cma13g00919 517 ProSitePatterns AAA-protein family signature. 389 407 IPR003960 GO:0005524|GO:0016887
Cma13g00919 517 Gene3D - 224 415 IPR027417 -
Cma13g00919 517 PANTHER ATP BINDING PROTEIN 35 503 - -
Cma13g00919 517 Gene3D - 416 486 - -
Cma13g00919 517 PANTHER BCS1 AAA-TYPE ATPASE 35 503 - -
Cma13g00919 517 MobiDBLite consensus disorder prediction 340 364 - -
Cma13g00919 517 Pfam Domain associated at C-terminal with AAA 59 151 IPR025753 -
Cma13g00919 517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 130 465 IPR027417 -
Cma13g00919 517 SMART AAA_5 268 421 IPR003593 -
Cma13g00919 517 MobiDBLite consensus disorder prediction 340 366 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00919 - - - csv:101216763 906.36
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma13g00919 Cma18g00135 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00919 Cma-Chr13:7318669 Cma14g00615 Cma-Chr14:3038168 0 dispersed
Cma13g00919 Cma-Chr13:7318669 Cma14g00612 Cma-Chr14:3031012 0 wgd
Cma13g00919 Cma-Chr13:7318669 Cma15g00290 Cma-Chr15:1370417 0 wgd
Cma13g00919 Cma-Chr13:7318669 Cma18g00135 Cma-Chr18:683637 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g477 . . . . . . . . Cmo13g00944 . . . . . . Cpe20g00212 . . . . . . . . . . . . . . . . . . . Lsi02g00331 Csa01g00805 Chy12g01312 Cme12g01737 . . . . . . . . Sed08g2559 . . Cma13g00919 Cma18g00135 Car13g00758 Car18g00127 Cpe09g01057 . Bhi08g01431 Tan05g2065 Cmetu12g1057 Lac10g0394 Hepe07g2269 . . Cla01g01413 Cam01g1479 Cec01g1518 Cco01g1564 Clacu01g1502 Cmu01g1395 Cre01g1315 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006739 0 1 0 0 0 2 1 2 2 2 1 2 1 1 3 1 2 0 1 2 2 1 2 2 2 2 1 1 1 0 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g00919 Cma_Chr13 FPKM 58.282036 65.05616 39.160885 40.901287 89.188484 93.321243 89.61425 8.635092 8.239485 6.629512