Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00925 ATGGGGGAGAAGCCGGAAGTGTTGGAGGCTGTGTTGAAGGAAGCTGTGGATTTGGAAAATATACCCATTGATGAGGTTTTTGAAAACCTGAGATGTAGCAAAGAGGGTCTTACCAGTGAGGCTGCTGAGGAAAGGCTGAAGATTTTTGGCCACAACAAGCTCGAGGAAAAGAAGGAAAGCAAAGTTTTGAAGTTTTTGGGGTTTATGTGGAATCCTCTATCGTGGGTTATGGAAGCTGCTGCAATTATGGCTATTGCACTTGCAAATGGAGGAGTAAATGCCCAGCTACATGGATTCTTCTTTTTGCTTTTTCACTTCTCCTTTCCTGTTCATTGTTCTGAGTACCCATTTAATTACTTGCAGGGAAAGCCCCCTGACTGGCAAGATTTTGTGGGTATCATTATTTTGCTTATCATCAACTCCACAATCAGTTTTATTGAGGAAAACAATGCAGGAAACGCTGCTGCTGCTCTCATGGCTCGTCTTGCTCCCAAAGGCAAGTCTGCACTTACAGGTGAATCTCTTCCTGTAACGAAAGGTCCCGGTGACGGCGTGTACTCTGGTTCTACTTGCAAGCAAGGAGAGATTGAAGCTGTGGTCATTGCTACTGGTGTCCATACCTTTTTTGGTAAAGCTGCTCATCTTGTTGACACCACCAACCAAGCTCGTGCTGGGATTCAGGAAGTACATTTCCTTCCTTTCAATCCTACTGACAAGCGAACGGCTTTGACTTATATCGACCATGAGGGCAAGATGCACAGAGTCAGTAAAGGTGCTCCAGAACAGATTCTAAATCTTGCACACAACAAGTCAGAGATAGAAAGAAAAGTTCATGCAGTGATTGATAAATTTGCTGAACGAGAGACAATTCGGAGAGCTTTAAATCTCGGCGTAAATGTGAAAATGATTACCGGAGATCAGCTGGCTATCGGAAAGGAAACAGGACGTCGATTGGGGATGGGAACTAACATGTACCCATCATCTGCTTTGCTAGGACAGGAAAAGGATGAGTCCATTGCTGCTTTACCTGTTGATGACCTTATAGAAAAAGCAGATGGTTTCGCCGGTGTATTCCCGGAGCACAAGTACGAGATCGTAAAACGCTTGCAAGCTATGAAACATATCTGTGGAATGACTGGTGATGGAGTGAACGATGCTCCTGCACTTAAAAAAGCAGACATAGGGATAGCTGTTGCAGATGCAACCGATGCAGCTCGGAGTGCTTCTGATATTGTTCTTACTGAGCCTGGTCTCAGTGTTATCATCAGTGCCGTTTTGACCAGTCGAGCAATATTTCAGAGGATGAAGAATTACACGATTTATGCAGTTTCCATCACAATACGTATCGTGCTTGGTTTCATGTTGCTGGCCCTCATCTGGAAATTTGATTTCCCACCATTTATGGTGCTTATTATTGCTATCCTTAACGATGGTACAATCATGACAATATCAAAGGATAGGGTCAAGCCATCTCCTCTCCCAGATAGTTGGAAGCTAGCTGAAATTTTTACTACTGGCATTGTTCTTGGTAGCTACTTGGCAATGATGACGGTTATATTCTTCTGGGCATCGTATAAAACCAACTTTTTCCCTTCACTGCTATTCTTCTGGTTTCTGCTGATCTATCGCGTTTTACGAAAACTTCAGCGAGTCTTCGGGGTACCAACACTTGAAAAAACAGCTCATGATGATTTCCGGAAGCTAGCCTCAGCTATATATCTGCAAGTGAGCACTATCAGTCAAGCACTCATTTTCGTCACACGATCTCGGAGTTGGTCCTATGTCGAGCGTCCAGGGGTGTTTCTTGTAGTGGCTTTTATTCTTGCTCAACTGGTTGCCACTTTGATTGCTGTGTATGCTAATTGGAGTTTTGCTGCCATTGAAGGAATTGGTTGGGGTTGGGCTGGTGTGATTTGGCTTTATAACATCATCTTTTATATTCCTCTTGATCCTATAAAGTTTGCTATTCGATATGCTTTGAGTGGGAAGGCTTGGGATCTCATGCTTGAGCAGAGGATTGCTTTCACAAGACAAAAGGATTTCGGTAAGGAACAACGCGAGCTGCAATGGGCTCACGCACAAAGAACGCTGCACGGTTTGCAACCGCCTGACACTAAGATGTTCACGGAGCGAACGCATTTCACAGAACTCAATCACATGGCTGAAGAAGCCAAAAGGAGAGCTGAAATTGCTAGATTGAGGGAACTCCATACACTGAAGGGTCATGTAGAATCAGTGGTTCGACTGAAGGGTCTCGATATCGAAACGATTCAACAAGCATACACTGTGTGA 2292 44.15 MGEKPEVLEAVLKEAVDLENIPIDEVFENLRCSKEGLTSEAAEERLKIFGHNKLEEKKESKVLKFLGFMWNPLSWVMEAAAIMAIALANGGVNAQLHGFFFLLFHFSFPVHCSEYPFNYLQGKPPDWQDFVGIIILLIINSTISFIEENNAGNAAAALMARLAPKGKSALTGESLPVTKGPGDGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDTTNQARAGIQEVHFLPFNPTDKRTALTYIDHEGKMHRVSKGAPEQILNLAHNKSEIERKVHAVIDKFAERETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQEKDESIAALPVDDLIEKADGFAGVFPEHKYEIVKRLQAMKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFTTGIVLGSYLAMMTVIFFWASYKTNFFPSLLFFWFLLIYRVLRKLQRVFGVPTLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRSWSYVERPGVFLVVAFILAQLVATLIAVYANWSFAAIEGIGWGWAGVIWLYNIIFYIPLDPIKFAIRYALSGKAWDLMLEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQPPDTKMFTERTHFTELNHMAEEAKRRAEIARLRELHTLKGHVESVVRLKGLDIETIQQAYTV 763
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7347211 7352550 + CmaCh13G009250.1 Cma13g00925 306752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00925 763 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 354 467 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma13g00925 763 Gene3D - 170 203 - -
Cma13g00925 763 PANTHER CALCIUM-TRANSPORTING ATPASE 220 287 - -
Cma13g00925 763 PANTHER CALCIUM-TRANSPORTING ATPASE 167 221 - -
Cma13g00925 763 PANTHER CALCIUM-TRANSPORTING ATPASE 121 167 - -
Cma13g00925 763 SUPERFAMILY Calcium ATPase, transmembrane domain M 17 660 IPR023298 -
Cma13g00925 763 Pfam haloacid dehalogenase-like hydrolase 285 393 - -
Cma13g00925 763 Gene3D - 288 416 IPR023214 -
Cma13g00925 763 SUPERFAMILY Calcium ATPase, transduction domain A 167 216 IPR008250 -
Cma13g00925 763 SMART Cation_ATPase_N_a_2 17 89 IPR004014 -
Cma13g00925 763 Gene3D - 712 763 - -
Cma13g00925 763 Pfam Cation transporter/ATPase, N-terminus 20 83 IPR004014 -
Cma13g00925 763 Pfam E1-E2 ATPase 168 228 - -
Cma13g00925 763 PANTHER CALCIUM-TRANSPORTING ATPASE 288 743 - -
Cma13g00925 763 PANTHER CALCIUM-TRANSPORTING ATPASE 3 93 - -
Cma13g00925 763 Gene3D - 417 628 - -
Cma13g00925 763 Gene3D - 204 216 - -
Cma13g00925 763 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 217 286 IPR023299 GO:0000166
Cma13g00925 763 SUPERFAMILY HAD-like 287 425 IPR036412 -
Cma13g00925 763 Gene3D - 68 169 - -
Cma13g00925 763 Gene3D - 218 287 IPR023299 GO:0000166
Cma13g00925 763 PRINTS H+-transporting ATPase (proton pump) signature 277 295 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma13g00925 763 PRINTS H+-transporting ATPase (proton pump) signature 573 594 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma13g00925 763 PANTHER PLASMA MEMBRANE ATPASE 1 220 287 - -
Cma13g00925 763 PANTHER PLASMA MEMBRANE ATPASE 1 167 221 - -
Cma13g00925 763 PANTHER PLASMA MEMBRANE ATPASE 1 121 167 - -
Cma13g00925 763 PANTHER PLASMA MEMBRANE ATPASE 1 288 743 - -
Cma13g00925 763 PANTHER PLASMA MEMBRANE ATPASE 1 3 93 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00925 Cma-Chr13:7347211 Cma12g00291 Cma-Chr12:1492694 6.12E-73 dispersed
Cma10g00176 Cma-Chr10:803743 Cma13g00925 Cma-Chr13:7347211 8.38E-81 wgd
Cma11g00166 Cma-Chr11:856024 Cma13g00925 Cma-Chr13:7347211 1.62E-78 wgd
Cma13g00925 Cma-Chr13:7347211 Cma18g00130 Cma-Chr18:635192 0 wgd
Cma13g00925 Cma-Chr13:7347211 Cma04g02750 Cma-Chr4:18498092 9.30E-78 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00925 K01535 - csv:101214920 962.6