Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma13g00925 | ATGGGGGAGAAGCCGGAAGTGTTGGAGGCTGTGTTGAAGGAAGCTGTGGATTTGGAAAATATACCCATTGATGAGGTTTTTGAAAACCTGAGATGTAGCAAAGAGGGTCTTACCAGTGAGGCTGCTGAGGAAAGGCTGAAGATTTTTGGCCACAACAAGCTCGAGGAAAAGAAGGAAAGCAAAGTTTTGAAGTTTTTGGGGTTTATGTGGAATCCTCTATCGTGGGTTATGGAAGCTGCTGCAATTATGGCTATTGCACTTGCAAATGGAGGAGTAAATGCCCAGCTACATGGATTCTTCTTTTTGCTTTTTCACTTCTCCTTTCCTGTTCATTGTTCTGAGTACCCATTTAATTACTTGCAGGGAAAGCCCCCTGACTGGCAAGATTTTGTGGGTATCATTATTTTGCTTATCATCAACTCCACAATCAGTTTTATTGAGGAAAACAATGCAGGAAACGCTGCTGCTGCTCTCATGGCTCGTCTTGCTCCCAAAGGCAAGTCTGCACTTACAGGTGAATCTCTTCCTGTAACGAAAGGTCCCGGTGACGGCGTGTACTCTGGTTCTACTTGCAAGCAAGGAGAGATTGAAGCTGTGGTCATTGCTACTGGTGTCCATACCTTTTTTGGTAAAGCTGCTCATCTTGTTGACACCACCAACCAAGCTCGTGCTGGGATTCAGGAAGTACATTTCCTTCCTTTCAATCCTACTGACAAGCGAACGGCTTTGACTTATATCGACCATGAGGGCAAGATGCACAGAGTCAGTAAAGGTGCTCCAGAACAGATTCTAAATCTTGCACACAACAAGTCAGAGATAGAAAGAAAAGTTCATGCAGTGATTGATAAATTTGCTGAACGAGAGACAATTCGGAGAGCTTTAAATCTCGGCGTAAATGTGAAAATGATTACCGGAGATCAGCTGGCTATCGGAAAGGAAACAGGACGTCGATTGGGGATGGGAACTAACATGTACCCATCATCTGCTTTGCTAGGACAGGAAAAGGATGAGTCCATTGCTGCTTTACCTGTTGATGACCTTATAGAAAAAGCAGATGGTTTCGCCGGTGTATTCCCGGAGCACAAGTACGAGATCGTAAAACGCTTGCAAGCTATGAAACATATCTGTGGAATGACTGGTGATGGAGTGAACGATGCTCCTGCACTTAAAAAAGCAGACATAGGGATAGCTGTTGCAGATGCAACCGATGCAGCTCGGAGTGCTTCTGATATTGTTCTTACTGAGCCTGGTCTCAGTGTTATCATCAGTGCCGTTTTGACCAGTCGAGCAATATTTCAGAGGATGAAGAATTACACGATTTATGCAGTTTCCATCACAATACGTATCGTGCTTGGTTTCATGTTGCTGGCCCTCATCTGGAAATTTGATTTCCCACCATTTATGGTGCTTATTATTGCTATCCTTAACGATGGTACAATCATGACAATATCAAAGGATAGGGTCAAGCCATCTCCTCTCCCAGATAGTTGGAAGCTAGCTGAAATTTTTACTACTGGCATTGTTCTTGGTAGCTACTTGGCAATGATGACGGTTATATTCTTCTGGGCATCGTATAAAACCAACTTTTTCCCTTCACTGCTATTCTTCTGGTTTCTGCTGATCTATCGCGTTTTACGAAAACTTCAGCGAGTCTTCGGGGTACCAACACTTGAAAAAACAGCTCATGATGATTTCCGGAAGCTAGCCTCAGCTATATATCTGCAAGTGAGCACTATCAGTCAAGCACTCATTTTCGTCACACGATCTCGGAGTTGGTCCTATGTCGAGCGTCCAGGGGTGTTTCTTGTAGTGGCTTTTATTCTTGCTCAACTGGTTGCCACTTTGATTGCTGTGTATGCTAATTGGAGTTTTGCTGCCATTGAAGGAATTGGTTGGGGTTGGGCTGGTGTGATTTGGCTTTATAACATCATCTTTTATATTCCTCTTGATCCTATAAAGTTTGCTATTCGATATGCTTTGAGTGGGAAGGCTTGGGATCTCATGCTTGAGCAGAGGATTGCTTTCACAAGACAAAAGGATTTCGGTAAGGAACAACGCGAGCTGCAATGGGCTCACGCACAAAGAACGCTGCACGGTTTGCAACCGCCTGACACTAAGATGTTCACGGAGCGAACGCATTTCACAGAACTCAATCACATGGCTGAAGAAGCCAAAAGGAGAGCTGAAATTGCTAGATTGAGGGAACTCCATACACTGAAGGGTCATGTAGAATCAGTGGTTCGACTGAAGGGTCTCGATATCGAAACGATTCAACAAGCATACACTGTGTGA | 2292 | 44.15 | MGEKPEVLEAVLKEAVDLENIPIDEVFENLRCSKEGLTSEAAEERLKIFGHNKLEEKKESKVLKFLGFMWNPLSWVMEAAAIMAIALANGGVNAQLHGFFFLLFHFSFPVHCSEYPFNYLQGKPPDWQDFVGIIILLIINSTISFIEENNAGNAAAALMARLAPKGKSALTGESLPVTKGPGDGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDTTNQARAGIQEVHFLPFNPTDKRTALTYIDHEGKMHRVSKGAPEQILNLAHNKSEIERKVHAVIDKFAERETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQEKDESIAALPVDDLIEKADGFAGVFPEHKYEIVKRLQAMKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFTTGIVLGSYLAMMTVIFFWASYKTNFFPSLLFFWFLLIYRVLRKLQRVFGVPTLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRSWSYVERPGVFLVVAFILAQLVATLIAVYANWSFAAIEGIGWGWAGVIWLYNIIFYIPLDPIKFAIRYALSGKAWDLMLEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQPPDTKMFTERTHFTELNHMAEEAKRRAEIARLRELHTLKGHVESVVRLKGLDIETIQQAYTV | 763 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 7347211 | 7352550 | + | CmaCh13G009250.1 | Cma13g00925 | 306752 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma13g00925 | 763 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 354 | 467 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cma13g00925 | 763 | Gene3D | - | 170 | 203 | - | - | |
Cma13g00925 | 763 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 220 | 287 | - | - | |
Cma13g00925 | 763 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 167 | 221 | - | - | |
Cma13g00925 | 763 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 121 | 167 | - | - | |
Cma13g00925 | 763 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 17 | 660 | IPR023298 | - | |
Cma13g00925 | 763 | Pfam | haloacid dehalogenase-like hydrolase | 285 | 393 | - | - | |
Cma13g00925 | 763 | Gene3D | - | 288 | 416 | IPR023214 | - | |
Cma13g00925 | 763 | SUPERFAMILY | Calcium ATPase, transduction domain A | 167 | 216 | IPR008250 | - | |
Cma13g00925 | 763 | SMART | Cation_ATPase_N_a_2 | 17 | 89 | IPR004014 | - | |
Cma13g00925 | 763 | Gene3D | - | 712 | 763 | - | - | |
Cma13g00925 | 763 | Pfam | Cation transporter/ATPase, N-terminus | 20 | 83 | IPR004014 | - | |
Cma13g00925 | 763 | Pfam | E1-E2 ATPase | 168 | 228 | - | - | |
Cma13g00925 | 763 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 288 | 743 | - | - | |
Cma13g00925 | 763 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 3 | 93 | - | - | |
Cma13g00925 | 763 | Gene3D | - | 417 | 628 | - | - | |
Cma13g00925 | 763 | Gene3D | - | 204 | 216 | - | - | |
Cma13g00925 | 763 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 217 | 286 | IPR023299 | GO:0000166 | |
Cma13g00925 | 763 | SUPERFAMILY | HAD-like | 287 | 425 | IPR036412 | - | |
Cma13g00925 | 763 | Gene3D | - | 68 | 169 | - | - | |
Cma13g00925 | 763 | Gene3D | - | 218 | 287 | IPR023299 | GO:0000166 | |
Cma13g00925 | 763 | PRINTS | H+-transporting ATPase (proton pump) signature | 277 | 295 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cma13g00925 | 763 | PRINTS | H+-transporting ATPase (proton pump) signature | 573 | 594 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cma13g00925 | 763 | PANTHER | PLASMA MEMBRANE ATPASE 1 | 220 | 287 | - | - | |
Cma13g00925 | 763 | PANTHER | PLASMA MEMBRANE ATPASE 1 | 167 | 221 | - | - | |
Cma13g00925 | 763 | PANTHER | PLASMA MEMBRANE ATPASE 1 | 121 | 167 | - | - | |
Cma13g00925 | 763 | PANTHER | PLASMA MEMBRANE ATPASE 1 | 288 | 743 | - | - | |
Cma13g00925 | 763 | PANTHER | PLASMA MEMBRANE ATPASE 1 | 3 | 93 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma13g00925 | Cma-Chr13:7347211 | Cma12g00291 | Cma-Chr12:1492694 | 6.12E-73 | dispersed | |
Cma10g00176 | Cma-Chr10:803743 | Cma13g00925 | Cma-Chr13:7347211 | 8.38E-81 | wgd | |
Cma11g00166 | Cma-Chr11:856024 | Cma13g00925 | Cma-Chr13:7347211 | 1.62E-78 | wgd | |
Cma13g00925 | Cma-Chr13:7347211 | Cma18g00130 | Cma-Chr18:635192 | 0 | wgd | |
Cma13g00925 | Cma-Chr13:7347211 | Cma04g02750 | Cma-Chr4:18498092 | 9.30E-78 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma13g00925 | K01535 | - | csv:101214920 | 962.6 |