Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00931 ATGGCGCCGGTTCTATCTCGGTTACTGTTCCGGCGGATTGTTCAGGCACCATTTCTTCGCACCTCCACCGGCTTTAGCTTTTGCAGAAATGTTCATTCTATCCCTTTCTCTTCGGTGGAAGTGGAGCAAATATCAGGTTCTAAGCCAGGAGAAGTTCATAACTTGGTGCAGGGTAAATGGATTGGATCTTCCGGTTGGAACACCATTGTAGATCCTTTAAATGGAGAACCATTTATTAAAGTTGCTGAAGTTGATGAAACAGAAATTCAGCCATTTGTGAAGAGCCTGACCAAATGCCCCAAGCATGGCTTACATAATCCTTTGAAATCACCCGAGAGATATCTTTTGTATGGAGATGTATCGTCCAAGGCCGCTGACATGCTTTCGACACCAGAGGTGACTGACTTCTTTGCAAGGTTAATTCAAAGAGTTTCTCCAAAAAGTTATCAGCAAGCTTGGGCTGAAGTCAATGTTACTGTTAAATTTTTAAGGAACTTCTCTGGTGATCAGGTTCGCTTCCTAGCAAGGTCCTTTGCAGTACCTGGAGATCATCTTGGACAACAAAGTCATGGTTACCGTTGGCCTTATGGTCCTGTAGCAATTATCACTCCTTTCAACTTCCCCTTGGAAATTCCTTTACTTCAGGTGATGGGTGCACTCTACATGGGCAACAAACCTGTTCTAAAAGTTGATAGCAAGGTTATCATAGTTATGGAGCAAATGATTCGATTGCTACACCATTGTGGTCTTCCTCTTGAAGATTTAGATTTCATAAATTGTGATGGAAAGACGATGAACAAGTTATTGATCGAGGGAAATCCATCCATGACTCTTTTCACTGGTAGCTCAAGAGTGGCAGAAAAGTTGGCTGTTGACTTGAAGGGTCGCATTAAACTGGAAGATGCAGGTTTTGATTGGAAAGTCTTAGGACCAGATGTTCGAGAGGAAGACTATGTTGCATGGGTTTGTGATCAAGATGCATATGCTTGCAGCGGCCAGAAGTGCTCGGCACAGTCCATAATGTTCATGCATGAGAACTGGTCGAAAACTTCACTCATTTCGAAGATAAAGGATCTGGCAGAGAGAAGAAATTTGACTGATTTAACGATTGGCCCTGTTCTAACGTTAACAAATGAAATGATGCTAGATCACATGAACAAATTGCTCACGATACCAGGAGCAAAGTTACTGTTTGGAGGTGAACCTCTCAAAAACCATTCCATTCCAGCCATTTATGGTGCTATGAAACCCACTGCAGTGTATCTTCCACTCGAAGAAATGATGAAAGATGAGAATTATGAGCTTGTTACTAAGGAAATTTTTGGACCATTTCAGATTATTACTGAATATAAGAGCGATCAACTGTCAGTTGTGTTGGATTCTCTTGAGCGGATGCATGCTCATCTAACAGCAGCGGTTGTTTCAAATGACCCTCTTTTTCTACAGGAAGTTATTGGGAATACTGTAAACGGGACGACGTATGCGGGTTTACGAGCTAGAACAACAGGAGCTCCGCAGAACCATTGGTTTGGACCAGCAGGTGACCCTAGGGGTGCTGGTATTGGAACTCCAGAAGCCATCAAACTCGTATGGTCTTGCCATAGAGAGATCATATATGATATTGGCCCCTTGCCCTTGAATTGGACAACTCCACCATCTTCTTAA 1665 42.82 MAPVLSRLLFRRIVQAPFLRTSTGFSFCRNVHSIPFSSVEVEQISGSKPGEVHNLVQGKWIGSSGWNTIVDPLNGEPFIKVAEVDETEIQPFVKSLTKCPKHGLHNPLKSPERYLLYGDVSSKAADMLSTPEVTDFFARLIQRVSPKSYQQAWAEVNVTVKFLRNFSGDQVRFLARSFAVPGDHLGQQSHGYRWPYGPVAIITPFNFPLEIPLLQVMGALYMGNKPVLKVDSKVIIVMEQMIRLLHHCGLPLEDLDFINCDGKTMNKLLIEGNPSMTLFTGSSRVAEKLAVDLKGRIKLEDAGFDWKVLGPDVREEDYVAWVCDQDAYACSGQKCSAQSIMFMHENWSKTSLISKIKDLAERRNLTDLTIGPVLTLTNEMMLDHMNKLLTIPGAKLLFGGEPLKNHSIPAIYGAMKPTAVYLPLEEMMKDENYELVTKEIFGPFQIITEYKSDQLSVVLDSLERMHAHLTAAVVSNDPLFLQEVIGNTVNGTTYAGLRARTTGAPQNHWFGPAGDPRGAGIGTPEAIKLVWSCHREIIYDIGPLPLNWTTPPSS 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7373612 7378003 - CmaCh13G009310.1 Cma13g00931 306758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00931 554 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 308 496 IPR016163 GO:0016620
Cma13g00931 554 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 45 303 IPR016162 GO:0016491
Cma13g00931 554 PANTHER ALPHA-AMINOADIPIC SEMIALDEHYDE DEHYDROGENASE 27 553 IPR044638 GO:0004029
Cma13g00931 554 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 328 339 IPR016160 GO:0016491
Cma13g00931 554 PANTHER DELTA-1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE 12A1, MITOCHONDRIAL 27 553 - -
Cma13g00931 554 SUPERFAMILY ALDH-like 52 522 IPR016161 GO:0016491
Cma13g00931 554 Pfam Aldehyde dehydrogenase family 68 496 IPR015590 GO:0016491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00931 Cma-Chr13:7373612 Cma11g00104 Cma-Chr11:552767 3.07E-13 dispersed
Cma13g00931 Cma-Chr13:7373612 Cma12g00001 Cma-Chr12:1241 4.28E-16 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00931 K00294 - csv:101214440 1030.01