Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00932 ATGGAGGCTGCTGCTCCTGCTTTTGGCCGTCCAAGGCCTGTCGTCAAGCCCGAGAAGCCTGCCGGAGATAGCGACGACGATCGGGATTCTCCCTCTAACCAACATCTCCTTATCAAGAGAGAGAATCGAGCAAAAGAAGAGAATGAAAGTGAAGATAAAACGAGCCACTCATCCGATCAAAACGACTTAAGATGCACCAAGATTCAGGAAGAACAATTGGAATCGGCGCGAACAGAAATGGGGGAAGTGAGAGAAGAAAACCAGAGACTAAAAATGAGTTTGGGTCAAATCATGAAGGATTACGAAGCCCTAAAAATGCAATTTCTGGGGATTGTCGGACGGGAAGCGAAGAAATTACCAGAACACAACAAGGAACAACAACAGCGTCCCCATGATGATCAAACAGAGGAAACTGAACTGGTTTCATTAACGCTTGGGAGATATCCAATGGCGGAGAAGAAGAAGGCGGTCGAGGAAAAGAATATCAATGGGGGCGACAAGGAAGAAGTTGTCAAACAGGCTTTATCTCTTGGTCTGAATTGCAAATTCGAGCAAGAATCAACGGCGGCGACTGTTAAAGAAGCTAATTCCCCGAATCGGAGTTTAACAATTAGTGCTGATCATGAGACGAAGGAGGATGCTGGAGAGACAAATTGGCCGCCGAGTAAAGGATTGAAGACGATGCGAAGCGTTGACGATGATGCTCTCCCAACGAATCCGCCCAAGCGCGCTCGGGTCTGTGTTAGAGCCCGATGCGAAACCACCACGATGAACGACGGGTGCCAATGGCGGAAATACGGGCAAAAGATAGCAAAAGGAAACCCCTGTCCACGAGCATACTACCGCTGCACAGGCTCGCCGACATGTCCTGTTAGAAAACAGGTCCAGAGATGCGCCGACGACATGTCGATTTTAATAACTACCTATGAAGGTAACCATAACCACCCATTACCAGCCTCTGCCACCGCCATGGCTTCCACCACCTCCGCCGCTGCTTCCATGCTCCTCTCTGGCTCCTCCACCTCCTCTGCTCCAAACACGACGGCGGCGGCCTCCTCCTCCTCCTCCTCATCTAGCCACGCCCTAAGCTTTTACTCAAATTCAAAACAGAACTTTTACTTACCAAATAACTCCTCGATCATCTCATCCACTTCCCCAACTCACCCAACGATCACTTTGGATCTCACTTCAAATCCTTCTTCCTCTTCCTCAAATCCCTCAACCCATTTTGGTAAATTCCCATCCAGTTTCCCCAATTCTCGCTACCCTTTTACCAGTCAACTCGATTTCGGATCTTCTAGAAACAATGTCTTGTCGTGGAATAACGGCGTTCTTAGTTACAACAGAAATAACCACCCCACTACTACACCCACTAATAATATCTATCAAAATTACCTCCAACACCAACGAAACACCGCCATGTCACTGCCACATCAGCAACCGCCATTACCCGATACAATCGCCGCCGCCACTAAGGCCATCACAGCCGACCCCAGCTTCCAGTCTGCTCTCGCCGCCGCTCTTACATCCATCATCGGCTCTGGGGGCACCAGCGCCGGTACCGTAAAGTCATCGGCAAGAGGTGAACAACCCTTGTTTCAGTTGACATCGACGGCGACGACCACGACAAATAAAGGGAATGGATGTGGGACGAGCTTCTTGAGCAATATTACGACGGCGACGCCAAGTAATTCTCCGCCGACGGGAAATATGGCGTTTGTTCCAGCGAATTCATTGCCGTTTTCGAATCCAAAGAGCGCATCCGCATCTCCAGGTGATCATATTGATCTTACCAATTAA 1800 49.33 MEAAAPAFGRPRPVVKPEKPAGDSDDDRDSPSNQHLLIKRENRAKEENESEDKTSHSSDQNDLRCTKIQEEQLESARTEMGEVREENQRLKMSLGQIMKDYEALKMQFLGIVGREAKKLPEHNKEQQQRPHDDQTEETELVSLTLGRYPMAEKKKAVEEKNINGGDKEEVVKQALSLGLNCKFEQESTAATVKEANSPNRSLTISADHETKEDAGETNWPPSKGLKTMRSVDDDALPTNPPKRARVCVRARCETTTMNDGCQWRKYGQKIAKGNPCPRAYYRCTGSPTCPVRKQVQRCADDMSILITTYEGNHNHPLPASATAMASTTSAAASMLLSGSSTSSAPNTTAAASSSSSSSSHALSFYSNSKQNFYLPNNSSIISSTSPTHPTITLDLTSNPSSSSSNPSTHFGKFPSSFPNSRYPFTSQLDFGSSRNNVLSWNNGVLSYNRNNHPTTTPTNNIYQNYLQHQRNTAMSLPHQQPPLPDTIAAATKAITADPSFQSALAAALTSIIGSGGTSAGTVKSSARGEQPLFQLTSTATTTTNKGNGCGTSFLSNITTATPSNSPPTGNMAFVPANSLPFSNPKSASASPGDHIDLTN 599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7382978 7385739 + CmaCh13G009320.1 Cma13g00932 306759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00932 599 SMART WRKY_cls 257 317 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma13g00932 599 MobiDBLite consensus disorder prediction 208 238 - -
Cma13g00932 599 MobiDBLite consensus disorder prediction 337 358 - -
Cma13g00932 599 SUPERFAMILY WRKY DNA-binding domain 250 318 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma13g00932 599 MobiDBLite consensus disorder prediction 117 139 - -
Cma13g00932 599 ProSiteProfiles WRKY domain profile. 252 318 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma13g00932 599 Pfam WRKY DNA -binding domain 258 316 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma13g00932 599 Gene3D WRKY domain 242 319 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma13g00932 599 MobiDBLite consensus disorder prediction 1 88 - -
Cma13g00932 599 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 41 594 IPR044810 GO:0003700
Cma13g00932 599 Coils Coil 66 93 - -
Cma13g00932 599 MobiDBLite consensus disorder prediction 391 412 - -
Cma13g00932 599 MobiDBLite consensus disorder prediction 16 88 - -
Cma13g00932 599 PANTHER WRKY TRANSCRIPTION FACTOR 61-RELATED 41 594 - -
Cma13g00932 599 MobiDBLite consensus disorder prediction 117 138 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00180 Cma13g00932 CCT
Cma11g00161 Cma13g00932 CCT
Cma10g00180 Cma13g00932 ECH
Cma11g00161 Cma13g00932 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01814 Cma-Chr11:12117559 Cma13g00932 Cma-Chr13:7382978 2.38E-48 dispersed
Cma13g00932 Cma-Chr13:7382978 Cma19g00912 Cma-Chr19:8235872 6.50E-65 dispersed
Cma10g00180 Cma-Chr10:826059 Cma13g00932 Cma-Chr13:7382978 3.65E-82 wgd
Cma11g00161 Cma-Chr11:830454 Cma13g00932 Cma-Chr13:7382978 3.56E-100 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36132 PF03106 WRKY 5.70E-24 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00932 - - csv:101218344 751.895