Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00933 ATGGGGAAGTCGCCGGGAAAATGGATTAAGACCATATTGTTTGGGAAGAAATCTTCCAAATCCAATCTTTCCAAGGGCAGAGAGAGAAATGGAAATGGGAAAGAAGTATTGGTTTCTACCAAGGCATCAGAGACGAATTCTGTTATCAGTCATCCTGTAGCTTCACATTCAACCCCAAATGCCATCGATACAAATGAAGGCGTGTTAAAAATTACCGACAATAAGTCCTCTAATGTGTCGCATGAAAGATCAATATCAATCCCAGGAAATCAAGATGCCGAAATTCAAGGATCTTCCTGCCAAGATGCACCATCTGATTCTGAGAGAATCCGTGAAGAGGAGGCTGCAACTAAGGCTCAAGCTGCTTTTCGCGGTTATTTGGCTCGCCGAGCATTTCGGGCCCTCAAAGGTATCATTAGGCTGCAGGCACTTATTCGTGGTCATTTGGTAAGGAGACAAGCTGTTGCTACTCTATGTTGTATGCTCGGAATTGTCAAGTTTCAGGCTATTGCTCGGGGAAGAAGAGTAAGGCTTTCTGATGTAGGGTCTGAAGTGCAAAACAAATGTAGATTAGTGCAGCCACAGGATCAACCCTTAGTGGATCCTGCTGAAGTAAGTCTCTCTACACAAATGGCGAAACTTTCTGCAAATGCTTTCACTATGAAGCTTGCTTCATCTACAACTGCAAAATCTATGCAACTCTATTTTGATAATGGAGATGAAAATTCAGTCATGAAATGGTTAGAACGCTGGTCGCATTCTACATTTTGGAAACCGATTCCTCACGTAAAAAAAGCTCCAGAGACGAAATCTCAAAGAAGGCTGAGCACTGGTCAAACTGGAGAGGCACATACTGTTAGATCAAAACGCACAAGGAGAGTTCCTTCTGTAAACAACGACGGTGCTGCTGTCCAATCATCTTCTGAATTTGAGAAACCGAAACGTAATTTCAGGAAACCCTCAAGTCATTCAGCTGCAGAGCAGGTTCAGGAGAATCCTCAGATGGAGCTTGAGAAGGTCAAACGGAGTCTGAGAAAGGTCCATAATCCTGTCCTTGATAATCCTGCCGAAAAAGAAGTGGGTGATGAGAAGCCCAAGGAAAGTTTGGACAAGGCTTCTAATGGTCTAGGCCGTGACGTTTTGGCAAGAGGTACTAGTAATTCTTCTGAGAAGATGAAAAAGGAGGCAATCTCAACGATACCCGTCCAGCCTGACTTGGAAACAACTCCTGAGCCATTACCTGAGCCATTACCTGAGCCACTACTGATAAAAGCGATACGTAATGTACCTAATGGTGTTCCAGTTGAAGATTCACAGACTTTGATTGAGAGTAGTGACAAAGATAAGAACATTGCTGGAGATGAGGCTGCTGTGGAGACTAAGCCTTTGGCAGAGAGCTACCATAAAGATGAAATGAATCCATTATCAAATGGAGAATCGAATCACAAGGAAGATTATACTAACGACGAGAACCCGAAATCTGGCAGGAAAGCCTCGACTCCAGCCAAGCAAGAGCGAGTGGAGAATGGGTTGCAGCACAGCCCGACCATACCTAGCTACATGGCAGCAACTGAATCTGCCAAGGCAAAACTGAGAGCACAAGGATCACCAAGATTTAGACAGGATAATGAAAGAAATAACCTCAACCGACGACATTCTTTACCATCGCCAACGAATGCTAAAATTAGCTCACAGTCACCCCGAACACAAAGACTTGTTCATTCAGGTGGAAAAGGAGGAAATAAAAATGACAAGGCGCTTCTCGGATCAAGAGATGAAAATGGAAAGAGGGGTAAATTTCATCTGAAGGCTTTTTTGATTCATACATTAGTGAGTGATCAGGCATCACCTATTCAGCGACTGGGTCCATCTTCTTCTCAAGGGAGGGGGGCTGTTGAGGCCAATATCTGGTGCTGTCTGATTGTTCTGTCATCTTGGTTGTTTGAGTGCATGTACATCATAGGTTTTAAGTTCTTCCCTCCCCCCAAGTTTTTGGTGCTGCAAAACTCATTATTTAAGGATACTTTGTTGTAA 2034 43.71 MGKSPGKWIKTILFGKKSSKSNLSKGRERNGNGKEVLVSTKASETNSVISHPVASHSTPNAIDTNEGVLKITDNKSSNVSHERSISIPGNQDAEIQGSSCQDAPSDSERIREEEAATKAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVATLCCMLGIVKFQAIARGRRVRLSDVGSEVQNKCRLVQPQDQPLVDPAEVSLSTQMAKLSANAFTMKLASSTTAKSMQLYFDNGDENSVMKWLERWSHSTFWKPIPHVKKAPETKSQRRLSTGQTGEAHTVRSKRTRRVPSVNNDGAAVQSSSEFEKPKRNFRKPSSHSAAEQVQENPQMELEKVKRSLRKVHNPVLDNPAEKEVGDEKPKESLDKASNGLGRDVLARGTSNSSEKMKKEAISTIPVQPDLETTPEPLPEPLPEPLLIKAIRNVPNGVPVEDSQTLIESSDKDKNIAGDEAAVETKPLAESYHKDEMNPLSNGESNHKEDYTNDENPKSGRKASTPAKQERVENGLQHSPTIPSYMAATESAKAKLRAQGSPRFRQDNERNNLNRRHSLPSPTNAKISSQSPRTQRLVHSGGKGGNKNDKALLGSRDENGKRGKFHLKAFLIHTLVSDQASPIQRLGPSSSQGRGAVEANIWCCLIVLSSWLFECMYIIGFKFFPPPKFLVLQNSLFKDTLL 677
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7387045 7391756 + CmaCh13G009330.1 Cma13g00933 306760

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00933 677 SMART iq_5 134 155 IPR000048 GO:0005515
Cma13g00933 677 SMART iq_5 111 133 IPR000048 GO:0005515
Cma13g00933 677 MobiDBLite consensus disorder prediction 535 549 - -
Cma13g00933 677 PANTHER PROTEIN IQ-DOMAIN 31 1 591 - -
Cma13g00933 677 MobiDBLite consensus disorder prediction 334 373 - -
Cma13g00933 677 MobiDBLite consensus disorder prediction 475 492 - -
Cma13g00933 677 ProSiteProfiles IQ motif profile. 112 140 IPR000048 GO:0005515
Cma13g00933 677 MobiDBLite consensus disorder prediction 505 521 - -
Cma13g00933 677 MobiDBLite consensus disorder prediction 550 572 - -
Cma13g00933 677 Pfam Protein of unknown function (DUF4005) 500 582 IPR025064 -
Cma13g00933 677 PANTHER IQ-DOMAIN 5-RELATED 1 591 - -
Cma13g00933 677 ProSiteProfiles IQ motif profile. 136 158 IPR000048 GO:0005515
Cma13g00933 677 Pfam IQ calmodulin-binding motif 136 153 IPR000048 GO:0005515
Cma13g00933 677 Pfam IQ calmodulin-binding motif 114 133 IPR000048 GO:0005515
Cma13g00933 677 Gene3D - 110 158 - -
Cma13g00933 677 MobiDBLite consensus disorder prediction 264 418 - -
Cma13g00933 677 MobiDBLite consensus disorder prediction 73 104 - -
Cma13g00933 677 MobiDBLite consensus disorder prediction 380 394 - -
Cma13g00933 677 MobiDBLite consensus disorder prediction 461 594 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00933 - - - cmax:111495199 1142.49
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma13g00933 Cma18g00123 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00933 Cma-Chr13:7387045 Cma09g00343 Cma-Chr9:1410126 2.43E-22 dispersed
Cma13g00933 Cma-Chr13:7387045 Cma18g00123 Cma-Chr18:600823 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g521 Blo04g00761 Blo16g00193 . . . . . . Cmo13g00963 Cmo18g00095 . . . . . Cpe20g00197 . . . . . . . . . . . . . . . Cone2ag0858 Cone16ag0154 . . . Csa01g00786 . Cme12g01757 . . Bda11g01691 . . . . . Sed08g2583 . . Cma13g00933 Cma18g00123 Car13g00773 Car18g00113 Cpe09g01069 . Bhi08g01405 Tan05g2090 Cmetu12g0772 . . . . Cla01g01430 Cam01g1498 Cec01g1538 Cco01g1583 Clacu01g1521 Cmu01g1413 Cre01g1331 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008895 1 3 2 1 1 1 2 0 1 0 0 0 2 1 1 2 0 2 1 0 1 1 1 1 1 0 1 4 0 3 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g00933 Cma_Chr13 FPKM 27.635485 29.445772 22.27858 22.795246 50.53125 50.718117 52.367123 28.296509 26.61726 25.262356