Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00934 ATGGCGGATACACCAATTCGGGTCGCGACCTTCTGGACCCAAGCAAATGCTCTGCTTCGGAAAAACTTAACCTACCAGAAACGAAATTTGAGGACAAATATTCGTCTCATTTCCTTCCCATTCATCCTCTGTTTATTGCTCGTTCTACTTCAAAAAATAGTCAACGACGAATTGGATAAGCCGAAGAACAAGTGTGGTTGTGCTTGTGTTGATACAAATGGAGATGGTAAATGTGAGAAAGTTTGTGGGTTAGAGTACTCAACGTTGATACAAGCAGCAAGCTGCCCCATTCCAAGTCCTCCAAAATGGCCTCCCATTTTGCAAATGCCTGCTCCTGATTTCCGTGCTGTGAGAGCAGATTTTTTTCCACATAAAGACTTGCCAAATGAATCATGCAGGGAGTCAATGTCATGTCCTGTTACTATGCTTTTGACTGGAAATAATCGCTCATTTGGAAATATTTTGGCTGGAAGTATGGTCCCTAGTTCTTTGACTTGGAATTCTTCTGATGTTCTGTATGGTGCATCTCTTAACGTTTTGGGATCAGAATCGAGGCCTACAACAAACAATTTTCTTGATCCTGCTTTCATTTCAAACCTTCCTTTATATTATATGCAACGTCAGTGTGCGGCAGGCTCGACATTGTTAATTCCCGTTTCAATATTCTCTCTTTCAAAGACACAAGATATTACGTGTGTTCAAGGTCTACCATTGTGGCGCAATAGTTCTTCAGAGGTGAATGATGAGATATACAAAGGTTACCAAAACGGGAATTCAGAGGGGAAAATCAATGAGATTCTTTCAGGTTTTGATTTCTTAAATTCAGATGGGAACAATTTTAATGTGACTATATGGTATAATTCATCTTATAAGAGTGATATTGGCCGTTCTTCTAATGTTTTGTTGCGGGTTCCACGCCTTGTTAATCTGGTATCCAATGGCTACCTTAAATTTTTGTTTGGAGCGGGCACAGAGATGCCCTTCGAGTTTGTCAAAGAAATGCCAAAACCTGCAACAAAGATCAAACTGGATTTCTCTTCTCTGCTTGGTGCACTCTTCTTTACGTGGGTCATCCTCCAGCTTTTTCCTGTTATCTTGACATCGTTGGTATATGAGAAGCAACAGAAACTGAGAATCATGATGAAAATGCATGGGCTTGGTGATGGGCCTTATTGGATGATTTCATACGCTTATTTTCTCACAGTTTCTGCGGTATACATGTTTTGTTTTGTGATGTTTGGTTCAGTGATAGGGCTAAAATTTTTCACAATGAATGACTACAGCATCCAGTTTGTGTTTTATCTCTTATTTATAAATTTGCAAGTCTCCCTAGCCTTTCTAGTTGCTGCCATGTTTTCAACTGTCAAAACTGCTGAAGTTTCGACATATATATGTGTCTTTGGAACAGGGCTCTTAGGTGGATTTCTCTTCCAATTTTTTGTTGAAGATCCATCATTCCCACGAGGATGGATCGTAGTTATGGAGTTATACCCTGGATTTTTGCTATATCGTGGGTTGTATGAGTTTGCATTTTATTCGTTCACTGGGAATCTAATGGGAACTTATGGGATGCGGTGGAAAGATTTGACTGATAGTATTAATGGAATGAGAGAAGTCTTGATCATTATGCTTGTTGAGTGGATAGTGGTGCTTCTAGTTGCATTCTGGATCGATCGAGGTTTATCGACAGGAAGTTGGAAGCATCCTTTATTTTTCCTTCAAAGACGTGACAAGAAAGCTCCATCTCAGAATCCTGGTTTGGAAAGGCAAGGATCAGAAGTCTTGGTTCAGATTGATCAACCTGATGTCAAAGAAGAGAGGGATAAGGTTGAAAAGTTGCTGAAGGAAGGAGATCCAAGTCATGTCATCATTTGTGACCATCTCAAAAAGGTATACCGAGGAAAGGATGGGAACCCTGAGAAGTTTGCAGTTAGGGGACTATCTCTTGCTTTGCTTCGAGGAGAATGCTTTGGAATGCTAGGTCCTAATGGTGCAGGAAAGACCTCCTTTATCAGTATGATGATTGGTCTTATAAAACCCACCGCTGGAACAGCCTTTGTCGAAGGTCTGGACATAAGGACCGAGATGGATGGCATATATGCAAGCATGGGTGTTTGTCCACAGCATGACCTGTTATGGGAAACCTTGACAGGAAGGGAGCACCTACTCTTTTATGGCAGACTGAAGAATTTAAAAGATTCTGCTTTAATACAAGCAGTGGAAGAATCTCTCAAGGGGGTCAACCTCTTCCATGGAGGAGTAGCGGATAAACAAGCTGGGGAGTACAGTGGAGGTATGAAGAGGAGGCTTAGTGTTGCTATTTCACTGATTGGAGATCCTAAAGTTGTTTATATGGATGAGCCAAGCACCGGCCTAGATCCAGCTTCAAGAAAAAGTTTATGGAATCTTGTGAAGCGTGCGAAGCAAGATCGAGCAATCATCCTTACTACTCATTCTATGGAAGAGGCGGAAGTCTTGTGCGATCGGATAGGAATTTTTGCAGATGGAAGCCTTCAGTGTATTGGAAATCCAAAAGAGCTTAAAGCCAGATATGGTGGGGCTTATGTATTGACGATGACAACATCCCCTGCTCATGAGGGAGATGTTGAGAACATGGTGAAGCGTTTGGCCCCTGGAGCTAGCAAGATATACCGCTTATCTGGAACCCAAAAATTTGAGCTTCCAAAACACCAGGTTCGGATTGCAGATGTGTTCCAAGCAGTGGAAAATGCCAAAAGCAGGTTTGCAGTATTGGCTTGGGGTTTGGCTGACACCACTTTAGAGGATGTGTTTATCAAAAGTTCAATTTATGTATCATGTTGGCTGGTGCACCTAAAAGTTAGAAAAATTAGGAAAAGAACAGTTTTTTAA 2871 41.41 MADTPIRVATFWTQANALLRKNLTYQKRNLRTNIRLISFPFILCLLLVLLQKIVNDELDKPKNKCGCACVDTNGDGKCEKVCGLEYSTLIQAASCPIPSPPKWPPILQMPAPDFRAVRADFFPHKDLPNESCRESMSCPVTMLLTGNNRSFGNILAGSMVPSSLTWNSSDVLYGASLNVLGSESRPTTNNFLDPAFISNLPLYYMQRQCAAGSTLLIPVSIFSLSKTQDITCVQGLPLWRNSSSEVNDEIYKGYQNGNSEGKINEILSGFDFLNSDGNNFNVTIWYNSSYKSDIGRSSNVLLRVPRLVNLVSNGYLKFLFGAGTEMPFEFVKEMPKPATKIKLDFSSLLGALFFTWVILQLFPVILTSLVYEKQQKLRIMMKMHGLGDGPYWMISYAYFLTVSAVYMFCFVMFGSVIGLKFFTMNDYSIQFVFYLLFINLQVSLAFLVAAMFSTVKTAEVSTYICVFGTGLLGGFLFQFFVEDPSFPRGWIVVMELYPGFLLYRGLYEFAFYSFTGNLMGTYGMRWKDLTDSINGMREVLIIMLVEWIVVLLVAFWIDRGLSTGSWKHPLFFLQRRDKKAPSQNPGLERQGSEVLVQIDQPDVKEERDKVEKLLKEGDPSHVIICDHLKKVYRGKDGNPEKFAVRGLSLALLRGECFGMLGPNGAGKTSFISMMIGLIKPTAGTAFVEGLDIRTEMDGIYASMGVCPQHDLLWETLTGREHLLFYGRLKNLKDSALIQAVEESLKGVNLFHGGVADKQAGEYSGGMKRRLSVAISLIGDPKVVYMDEPSTGLDPASRKSLWNLVKRAKQDRAIILTTHSMEEAEVLCDRIGIFADGSLQCIGNPKELKARYGGAYVLTMTTSPAHEGDVENMVKRLAPGASKIYRLSGTQKFELPKHQVRIADVFQAVENAKSRFAVLAWGLADTTLEDVFIKSSIYVSCWLVHLKVRKIRKRTVF 956
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7392459 7402720 + CmaCh13G009340.1 Cma13g00934 306761

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00934 956 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 626 860 IPR003439 GO:0005524
Cma13g00934 956 Pfam ABC-2 family transporter protein 249 555 - -
Cma13g00934 956 SMART AAA_5 653 836 IPR003593 -
Cma13g00934 956 Pfam ABC transporter 645 789 IPR003439 GO:0005524
Cma13g00934 956 ProSitePatterns ABC transporters family signature. 762 776 IPR017871 GO:0005524
Cma13g00934 956 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 622 851 IPR027417 -
Cma13g00934 956 Gene3D - 611 879 IPR027417 -
Cma13g00934 956 PANTHER ABC TRANSPORTER A FAMILY PROTEIN 8 933 - -
Cma13g00934 956 CDD ABC_subfamily_A 622 848 - -
Cma13g00934 956 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 8 933 IPR026082 GO:0016021|GO:0055085|GO:0140359
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00934 - - - csv:101218105 1479.92
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g00155 Cma13g00934 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00155 Cma-Chr11:812973 Cma13g00934 Cma-Chr13:7392459 2.87E-84 dispersed
Cma11g00159 Cma-Chr11:818944 Cma13g00934 Cma-Chr13:7392459 0 dispersed
Cma13g00934 Cma-Chr13:7392459 Cma09g00928 Cma-Chr9:4635160 6.55E-15 dispersed
Cma03g00057 Cma-Chr3:510429 Cma13g00934 Cma-Chr13:7392459 2.40E-63 transposed
Cma11g00154 Cma-Chr11:805696 Cma13g00934 Cma-Chr13:7392459 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g523 . Blo16g00190 . . . Bpe13g00282 Bma06g00181 . Cmo13g00964 . . Cma11g00155 . . Sed08g0202 . Cpe04g01510 Bhi02g00338 Tan09g2142 Cmetu02g1068 . Hepe09g0132 . . Cla06g01602 Cam06g1776 Cec06g1827 Cco06g1835 Clacu06g1738 Cmu06g1683 Cre06g2499 . . Cone13ag0082 . . Csa01g00785 . Cme12g01759 . . Bda11g01693 . . Bpe15g00610 Bma03g00820 . . . Cmo11g00153 Cma13g00934 . . . . . Bhi08g01401 . . Lac10g0365 Hepe07g2289 . . . . . . . . . Lsi06g01480 Csa01g00221 Chy02g02512 Cme02g01898
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001221 4 5 2 3 3 2 0 2 2 2 2 2 3 2 2 3 2 1 3 2 2 2 3 2 2 2 2 3 8 2 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g00934 Cma_Chr13 FPKM 2.668685 3.261716 5.758495 5.454309 5.917443 3.610566 5.367672 8.761858 7.363711 7.668979