Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00950 ATGCCGCCGAGACGATATGCTTTTGGACGGGCAGATGAGGCCACCCACCCTGACTCCATTAGAGCCACCTTGGCTGAGTTCATTTCCACTTTCATCTTCGTCTTCGCCGGCGAAGGCTCTGTTCTTGCTCTTGACAAAATTTTCAGTCCAGCAGATTATGGAAGTTATGGCCATGGAGGTTACAGTCACGGTGACGGTTATGGTCGGAGGAGGACCGACACGGGGCGAGGTGCATCCGATTTAGTTGTGATAGCGATAGCGCACGCATTCGCTCTGTTCTCAGCGGTTGCGGCGAGTATCAACATCTCCGGTGGGCACGTCAATCCGGCTGTGACTTTTGGCGCTCTTCTTGGCGGGAGGATATCACTTATCCGTGGAATTTTCTATTGGGTAGCTCAAATTTTGGGTGCCATCGTCGCTTCACTGCTCTTGAGACTCGCAACCGGTGGCATGAGGCCTATGGGGTTCTTCGTTTCATCAGGGATATCAGAAATGCACGGCTTTCTGCTAGAGATAGTGCTGACGTTCGCCTTGGTGTACACAGTCTACGCAACAGCAATAGACCCAAAGAGAGGCAGTTTGGGGACTATAGCGCCACTGGCAATCGGGTTAATAGTGGGGGCTAATATTCTGGTGGGTGGGGCGTTTGATGGGGCGTGCATGAACCCGGCGAGAGCGTTTGGGCCGTCGTTGGTGGGGTGGAGATGGGACAATCATTGGATCTACTGGATTGGGCCATTGCTGGGAGGTGGGCTTGCTGCGCTTGTTTATGAGTACTTGGTGATTCCCGTTGAGCCTCCTCTGCATACTCACCAGCCCTTAGCTCCGGAGGATTACTAA 840 53.33 MPPRRYAFGRADEATHPDSIRATLAEFISTFIFVFAGEGSVLALDKIFSPADYGSYGHGGYSHGDGYGRRRTDTGRGASDLVVIAIAHAFALFSAVAASINISGGHVNPAVTFGALLGGRISLIRGIFYWVAQILGAIVASLLLRLATGGMRPMGFFVSSGISEMHGFLLEIVLTFALVYTVYATAIDPKRGSLGTIAPLAIGLIVGANILVGGAFDGACMNPARAFGPSLVGWRWDNHWIYWIGPLLGGGLAALVYEYLVIPVEPPLHTHQPLAPEDY 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7449215 7450530 - CmaCh13G009500.1 Cma13g00950 306777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00950 279 ProSitePatterns MIP family signature. 106 114 IPR022357 -
Cma13g00950 279 SUPERFAMILY Aquaporin-like 13 270 IPR023271 -
Cma13g00950 279 Gene3D Glycerol uptake facilitator protein. 5 265 IPR023271 -
Cma13g00950 279 PANTHER AQUAPORIN-8 72 279 IPR034294 -
Cma13g00950 279 PANTHER AQUAPORIN-8 3 49 IPR034294 -
Cma13g00950 279 TIGRFAM MIP: MIP family channel proteins 25 257 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma13g00950 279 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma13g00950 279 PRINTS Major intrinsic protein family signature 88 112 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma13g00950 279 PRINTS Major intrinsic protein family signature 125 144 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma13g00950 279 PRINTS Major intrinsic protein family signature 170 188 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma13g00950 279 PRINTS Major intrinsic protein family signature 203 225 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma13g00950 279 PRINTS Major intrinsic protein family signature 240 260 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma13g00950 279 Pfam Major intrinsic protein 14 257 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma13g00950 279 PANTHER - 3 49 - -
Cma13g00950 279 PANTHER - 72 279 - -
Cma13g00950 279 CDD MIP 21 260 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01199 Cma-Chr3:8008162 Cma13g00950 Cma-Chr13:7449215 1.78E-104 dispersed
Cma07g00887 Cma-Chr7:4200653 Cma13g00950 Cma-Chr13:7449215 2.40E-102 dispersed
Cma13g00950 Cma-Chr13:7449215 Cma14g00234 Cma-Chr14:1032156 1.79E-91 dispersed
Cma13g00950 Cma-Chr13:7449215 Cma18g00110 Cma-Chr18:540120 4.51E-175 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00950 K09873 - csv:101208863 481.87