Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00959 ATGGAGGAGAAAGGAGTGGATGATCGTGTAGTGAAGCGTTTGGATTCCGAACGCAGTTCAAATTCGATGAACAGGCAGAGATTTGGGGAAGTGAGTGGAGTGCTATCCATCGAGGAGTTCTTTGAGGACCAAGAAGTGCCTCCATGGAGGAAGCAGCTGACGTTTAGAGCTTTTTTCGTTAGTTTTTGGCTGAGCATTTTGTTCAGCTTCATTGTAATGAAGCTCAACCTGACCACTGGTATTATACCTTCACTCAATGTATCTGCTGGTCTATTAGGTTTCTTCTTTGTCAAGTCATGGACGAAATTTTTGGAGAGATCAGGCCTCTTGAGGCAGCCTTTCACCAGGCAGGAGAACACTGTCATCCAAACCTGTGTTGTTGCCTCGTCTGGCATCGCTTTCAGCGGAGGTTTTGGAAGTTACTTATTTGGAATGAGCGAACGGATTGCTCATAGATCATCCGGCAGTAAAGATTTCAAAGATCCATCATTAGGATGGATTATTGGTTTTCTATTTGTTGTTAGCTTTCTTGGCCTCTTCTCAGTTGTACCCTTGCGAAAGATCATGGTCGTTGACTTCAAATTAACTTATCCAAGTGGTACTGCAACTGCTCATTTGATTAATAGTTTCCATACTCCCCGAGGAGCTGCACTAGCAAAGAAACAGGTGAGAATGCTTGGCAGGTTTTTCTCTTTGAGCTTCTTGTGGGGCTTTTTTCAATGGTTCTTTCAAGCTGCAGATGGTTGTGGATTTGCACATTTTCCAACATTTGGGCTCCAAGCACGTGCAAACAGGTTTTACTTTGACTTCTCAGCAACATATATTGGAGTTGGAATGATTTGCCCCCACATAATAAATGTATCGGTGCTTGTTGGAGGAATTATCTCTTGGGGCATAATGTGGCCTCTCATAGAAAATAAAAAGGGTCAATGGTTTAGTGAGAAATTGAGCTCAGATGACCTTAGTGGTCTTGAAGGTTACAAGGTATTTATAGCAATAGCCATAATTCTTGGTGATGGCCTATACAACTTCTTCAAAGTATTGACTCGGACCCTCTCCGGTTTGTTCAGCCAACTTCAACACAAAAGAGAGGCTGAAGATTTTTCCTTGGGAAATTCATCAAGGTCTGAGTTTTCTTATGATGATGAACGAAGGAAACAACTTTTTCTCAAGGATCAAATACCAATCTGGTTTGCCATTGGAGGCTATGTTGTAATTGCTGCAGTGTCGATTAACACTCTTCCACACATCTTTTCCCAGCTGAAATGGTATTATATTTTGGTCATCTACGTCTTTGCTCCTATCTTGGCCTTCTGTAATGCATATGGATGTGGACTCACGGATTGGTCTCTAGCGTCTACTTATGGAAAGCTTGCCATTTTCACAATTGGTGCCTGGGCTGGGCCTTTGCATGGAGGAGTTATTGCTGGTCTAGCAGCGTGTGGGGTTATGATGAATATTGTCTCCACAGCGTCCGACTTAATGCAGGATTTCAAGACCGGCTATCTAACCTTAGCTTCACCCCGCTCCATGTTTGTCAGCCAAGTAGTAGGCACAACAATGGGCTGCATTATTTCCCCTTGTGTCTTTTGGCTCTTCTACAAGGCATTTGATGATCTTGGTCTTCGAACTGGTCAATACCCTGCCCCGAATGCGGTTCTTTTTCGCAACATGTCTGTGTTGGGTGTTGAAGGCCTCTCAAGTCTACCAAAGAATTGTCTTACCTTCTGTTATGTGTTTTTCGCCACCGCCATTTTGGTTAACTTGATTAAAGACTTGATACCAAAAAAGTGGGCAAGGTTCATTCCCTTACCTATGGCAATGGCATTGCCATTCTACTTAGGGCCATACTTTGCAATTGATATGAGCCTTGGAAGCTTGATATTGTTTGTGTGGCAGAAGCTAAACAAAACCAAGGCCGATGCATTTGGTCCAGCCGTAGCATCCGGTTTGATATGTGGGGATGGGATTTGGATGTTGCCTTATTCAATTTTGGCATTGGCGGAAGTCAAGCCACCAATTTGCATGAAGTTCCTATCAAGGGCAACCAACGCAAGAGTAGATAAGTTCCTAGGATCGTAG 2082 43.42 MEEKGVDDRVVKRLDSERSSNSMNRQRFGEVSGVLSIEEFFEDQEVPPWRKQLTFRAFFVSFWLSILFSFIVMKLNLTTGIIPSLNVSAGLLGFFFVKSWTKFLERSGLLRQPFTRQENTVIQTCVVASSGIAFSGGFGSYLFGMSERIAHRSSGSKDFKDPSLGWIIGFLFVVSFLGLFSVVPLRKIMVVDFKLTYPSGTATAHLINSFHTPRGAALAKKQVRMLGRFFSLSFLWGFFQWFFQAADGCGFAHFPTFGLQARANRFYFDFSATYIGVGMICPHIINVSVLVGGIISWGIMWPLIENKKGQWFSEKLSSDDLSGLEGYKVFIAIAIILGDGLYNFFKVLTRTLSGLFSQLQHKREAEDFSLGNSSRSEFSYDDERRKQLFLKDQIPIWFAIGGYVVIAAVSINTLPHIFSQLKWYYILVIYVFAPILAFCNAYGCGLTDWSLASTYGKLAIFTIGAWAGPLHGGVIAGLAACGVMMNIVSTASDLMQDFKTGYLTLASPRSMFVSQVVGTTMGCIISPCVFWLFYKAFDDLGLRTGQYPAPNAVLFRNMSVLGVEGLSSLPKNCLTFCYVFFATAILVNLIKDLIPKKWARFIPLPMAMALPFYLGPYFAIDMSLGSLILFVWQKLNKTKADAFGPAVASGLICGDGIWMLPYSILALAEVKPPICMKFLSRATNARVDKFLGS 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7510416 7514832 + CmaCh13G009590.1 Cma13g00959 306786

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00959 693 TIGRFAM OPT_sfam: oligopeptide transporter, OPT superfamily 48 666 IPR004813 GO:0035673
Cma13g00959 693 Pfam OPT oligopeptide transporter protein 52 665 IPR004813 GO:0035673
Cma13g00959 693 PANTHER OLIGOPEPTIDE TRANSPORTER YGL114W-RELATED 20 692 IPR045035 GO:0035673
Cma13g00959 693 PANTHER METAL-NICOTIANAMINE TRANSPORTER YSL8-RELATED 20 692 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00959 - - - csv:101211969 1277.31
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma13g00959 Cma18g00101 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00959 Cma-Chr13:7510416 Cma16g00028 Cma-Chr16:134110 0 dispersed
Cma01g00255 Cma-Chr1:1182517 Cma13g00959 Cma-Chr13:7510416 0 transposed
Cma04g02997 Cma-Chr4:19609442 Cma13g00959 Cma-Chr13:7510416 0 transposed
Cma11g01519 Cma-Chr11:9929680 Cma13g00959 Cma-Chr13:7510416 0 transposed
Cma13g00959 Cma-Chr13:7510416 Cma18g00101 Cma-Chr18:476546 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g954 . . . . . . . . . Cmo18g00078 . . . . . Cpe20g00180 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed08g2805 . . Cma13g00959 Cma18g00101 Car13g00795 Car18g00091 . . Bhi08g01350 Tan05g2138 Cmetu04g2126 Lac10g0326 Hepe07g2321 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001400 2 2 2 3 2 2 3 2 2 3 2 2 3 3 3 3 2 1 3 2 3 2 2 1 2 3 2 6 4 2 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g00959 Cma_Chr13 FPKM 11.302317 11.949364 28.598337 30.123268 5.238069 5.292689 5.809146 5.153522 4.320963 5.418884