Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00961 ATGGGTCGCCAAGCTGTTTCCAAGCTTATAGGATCGGCCATTAATCGCAAAATTTCTTCATCTTCATCATCAGCTGGGTTTTCGCGGGCGGCGTCGCAGATTCGGCATTACGCAGCTGCTCCTCCGCCTCCGCCGGCAGTTTTCGTTGATAAGAACACTCGCGTCATCTGTCAAGGGATCACTGGTAAAAACGGTACCTTTCATACAGAGCAGGCCATCGAGTATGGCACCAAAATGGTTGGTGGTGTTACGCCGAAGAAGGGTGGAACAGAACACTTGGGCCTTCCTGTTTTTAACACAGTTGCTGATGCTAAAGCTGAAACAAAGGCCAATGCATCAGTTATTTACGTCCCCCCGCCATTTGCTTCAGCAGCAATATTGGAGGCGATGGAAGCTGAGTTAGATCTCGTTGTTTGTATAACGGAAGGGATCCCACAGCATGACATGGTGCGAGTTAAGGCTGCTTTAAACAGGCAAACCAAAACTAGATTGATTGGCCCTAATTGCCCTGGCATTATCAAGCCTGGAGAATGTAAAATTGGAATTATGCCTGGATATATCCACAAACCTGGGCGCATTGGCATTGTGTCACGATCTGGTACCTTGACCTATGAGGCGGTTTTTCAAACAACTGCCGTTGGCCTTGGACAATCCACATGCGTAGGTATTGGAGGGGATCCCTTTAATGGGACTAACTTTGTTGATTGCATCGAGAAGTTTCTCGCTGATCCTCAGACAGAAGGTATTGTTCTAATTGGAGAAATAGGTGGGACTGCTGAAGAAGATGCTGCTGCTTTGATAAAGGAAAGTGGGACTGAGAAGCCTATTGTTGCATTCATTGCTGGCCTAACTGCTCCTCCAGGCCGTCGCATGGGTCATGCTGGTGCCATTGTTTCAGGTGGAAAAGGTACAGCCCAAGACAAAATCAAGACTCTAAGAGAAGCTGGAGTAACAGTGGTGGAGTCACCTGCGAAAATTGGCGTTACGATGCTCGATGTTTTCAAACAGAGAGGCCTCGTTAGTTAA 1026 47.66 MGRQAVSKLIGSAINRKISSSSSSAGFSRAASQIRHYAAAPPPPPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVADAKAETKANASVIYVPPPFASAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNRQTKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCIEKFLADPQTEGIVLIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGVTMLDVFKQRGLVS 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7521882 7526272 + CmaCh13G009610.1 Cma13g00961 306788

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00961 341 PRINTS Succinyl-CoA synthase signature 126 143 - -
Cma13g00961 341 PRINTS Succinyl-CoA synthase signature 222 240 - -
Cma13g00961 341 PRINTS Succinyl-CoA synthase signature 253 266 - -
Cma13g00961 341 PRINTS Succinyl-CoA synthase signature 286 303 - -
Cma13g00961 341 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 1. 197 226 IPR033847 -
Cma13g00961 341 Pfam CoA binding domain 50 143 IPR003781 -
Cma13g00961 341 Gene3D - 46 165 - -
Cma13g00961 341 PANTHER SUCCINYL-COA LIGASE SUBUNIT ALPHA 6 340 - -
Cma13g00961 341 SUPERFAMILY Succinyl-CoA synthetase domains 168 334 IPR016102 -
Cma13g00961 341 PANTHER SUCCINATE--COA LIGASE [ADP-FORMING] SUBUNIT ALPHA-1, MITOCHONDRIAL 6 340 - -
Cma13g00961 341 PIRSF SucCS_alpha 44 337 IPR005810 GO:0003824
Cma13g00961 341 Pfam CoA-ligase 196 317 IPR005811 GO:0003824
Cma13g00961 341 Gene3D - 166 339 IPR016102 -
Cma13g00961 341 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 46 167 IPR036291 -
Cma13g00961 341 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 282 295 IPR017440 -
Cma13g00961 341 SMART CoA_binding_2 48 144 IPR003781 -
Cma13g00961 341 Hamap Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 45 334 IPR005810 GO:0003824
Cma13g00961 341 TIGRFAM sucCoAalpha: succinate-CoA ligase, alpha subunit 48 333 IPR005810 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00961 K01899 LSC1; succinyl-CoA synthetase alpha subunit [EC:6.2.1.4 6.2.1.5] - csv:101206269 635.565
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma13g00961 Cma18g00099 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00961 Cma-Chr13:7521882 Cma17g00368 Cma-Chr17:2050794 1.36E-20 dispersed
Cma13g00961 Cma-Chr13:7521882 Cma18g00099 Cma-Chr18:456561 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g960 . . . . Bpe12g00634 . . . Cmo13g00995 Cmo18g00076 . . . . . Cpe20g00178 . . . . . . . . . . . . . . . . . . . Lsi02g00271 Csa01g00750 Chy12g01362 Cme12g01794 Blo13g00104 . . . . . . Bma08g00126 Sed08g2797 . . Cma13g00961 Cma18g00099 Car13g00797 Car18g00089 Cpe09g01091 . Bhi08g01346 Tan05g2142 Cmetu12g0797 . Hepe07g2322 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011285 1 2 1 1 1 0 2 0 0 1 0 0 1 1 1 2 0 1 2 0 1 1 0 1 1 1 1 2 1 2 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g00961 Cma_Chr13 FPKM 29.261265 30.737106 26.880688 27.869925 31.358742 27.679562 31.406092 27.777803 28.434303 26.407951