Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00964 ATGTCATCGTCCGGCGGTAACTTTGGCGACGGAGCTGGCGGTGGCGCCGCCTCGCATGGCCCTCAGCTCTTCTTCTGCTATACGTGCAATCGTACGGTAACAATTACTCCCTCATCATCCTCCGATCTTTTGTGCCCCAACTGCAACGATAGCTTCGTTGAAGAAATGGATAGTCCAAACCCTAACCCTAGCCTTGTTCCCAATCCTTTCCTCTCCTTCACATCCGAGGCATTTCCGCCGTTCAGCTCCGGTGGCGGTGGAAATGGCGGTGGAAATGGAGGTTTCCCGATTATATTCTCCACGACATCATCATCCGGTGGCATTGGCGGTGGCGGTTCTATGATGAATGATCTATCGGCGCTATTGGGAGGCGGTTCTCATCGGTCGTCGTCCTTGCAAGACCCTGACGATTTTAGTCCCTTGCTCTTCCTCCAGAACTATCTTCAAAGCGCTAATGTTCAATTGGTAATCCAGAACGCATCGGGAGAGGCGTTTCATCCCTCTTCCAATTTCAATCTTGGAGATTACTTCTTCGGCCCCGGCCTCGAGCAGTTGATTCAACAACTTGCTGAAAACGATCCGAACCGTTATGGAACCCCTCCCGCTTCAAAGTCGGCGATTGAGGCACTTCCAAATATCAAAATTACGGAGGAATTGTTGGCCTCAGATTCTTCCCAGTGCGCTGTGTGTAAGGATACGTTTGAGCTCAACGAGGAGGCGAAACAGATGCCTTGCAAACACATATATCACGCAGATTGTATCATTCCATGGCTGGAATTGCATAATTCTTGTCCGGTATGTCGATATGAATTGCCCACAGATGATCCCGATTACGAGCAAAGGAATCGTGGGACTTCAGCTCCTAATCGAAGTCAAAGCGAAAGTCAACCCTTTGGTGATTCTTCTGTCCGTGGGGAATATGTTGGTGGAAGCGATCCTAATTCCGACGAGAATTCACCGAGTCAACATGAGCGGAGGGTTAGGAGGATAGCATTTCCTTGGCCATTCAGAGGTTTTGGTTCGGCCGCTGAGACTAGTAACAGCGGAGGTGGCAACAATAGTGGAAATAGCGACGAACCTAGCTCCAGAAATAGGGGAAATCAGAGCTCTTCAGAGCCCATGCAGGAAGATCTTGATTGA 1140 49.82 MSSSGGNFGDGAGGGAASHGPQLFFCYTCNRTVTITPSSSSDLLCPNCNDSFVEEMDSPNPNPSLVPNPFLSFTSEAFPPFSSGGGGNGGGNGGFPIIFSTTSSSGGIGGGGSMMNDLSALLGGGSHRSSSLQDPDDFSPLLFLQNYLQSANVQLVIQNASGEAFHPSSNFNLGDYFFGPGLEQLIQQLAENDPNRYGTPPASKSAIEALPNIKITEELLASDSSQCAVCKDTFELNEEAKQMPCKHIYHADCIIPWLELHNSCPVCRYELPTDDPDYEQRNRGTSAPNRSQSESQPFGDSSVRGEYVGGSDPNSDENSPSQHERRVRRIAFPWPFRGFGSAAETSNSGGGNNSGNSDEPSSRNRGNQSSSEPMQEDLD 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7534565 7535704 - CmaCh13G009640.1 Cma13g00964 306791

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00964 379 MobiDBLite consensus disorder prediction 338 379 - -
Cma13g00964 379 MobiDBLite consensus disorder prediction 341 379 - -
Cma13g00964 379 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 15 345 - -
Cma13g00964 379 ProSiteProfiles Zinc finger RING-type profile. 227 268 IPR001841 -
Cma13g00964 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 274 IPR013083 -
Cma13g00964 379 MobiDBLite consensus disorder prediction 277 325 - -
Cma13g00964 379 Pfam zinc-ribbon 22 56 IPR039525 GO:0061630
Cma13g00964 379 CDD RING-H2_RNF126_like 226 268 - -
Cma13g00964 379 MobiDBLite consensus disorder prediction 282 300 - -
Cma13g00964 379 SUPERFAMILY RING/U-box 207 275 - -
Cma13g00964 379 Pfam Ring finger domain 226 268 IPR001841 -
Cma13g00964 379 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1 15 345 - -
Cma13g00964 379 SMART ring_2 227 267 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00964 - - K11982 csv:101205252 612.838
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01160 Cma-Chr2:6840315 Cma13g00964 Cma-Chr13:7534565 6.88E-48 dispersed
Cma03g00272 Cma-Chr3:3700869 Cma13g00964 Cma-Chr13:7534565 9.49E-31 dispersed
Cma04g02247 Cma-Chr4:15673566 Cma13g00964 Cma-Chr13:7534565 3.31E-72 dispersed
Cma04g02826 Cma-Chr4:18906734 Cma13g00964 Cma-Chr13:7534565 4.44E-34 dispersed
Cma13g00964 Cma-Chr13:7534565 Cma15g00786 Cma-Chr15:3924330 2.98E-75 dispersed
Cma15g00211 Cma-Chr15:1024855 Cma13g00964 Cma-Chr13:7534565 1.05E-36 dispersed
Cma15g00268 Cma-Chr15:1277797 Cma13g00964 Cma-Chr13:7534565 2.34E-25 dispersed
Cma15g00674 Cma-Chr15:3232077 Cma13g00964 Cma-Chr13:7534565 1.42E-15 dispersed
Cma16g00245 Cma-Chr16:1140854 Cma13g00964 Cma-Chr13:7534565 2.81E-09 dispersed
Cma17g00923 Cma-Chr17:6934797 Cma13g00964 Cma-Chr13:7534565 1.06E-26 dispersed
Cma18g01147 Cma-Chr18:9238125 Cma13g00964 Cma-Chr13:7534565 4.22E-25 dispersed
Cma20g00389 Cma-Chr20:1869086 Cma13g00964 Cma-Chr13:7534565 4.71E-39 dispersed
Cma13g00964 Cma-Chr13:7534565 Cma18g00096 Cma-Chr18:442584 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g964 . . . . Bpe12g00632 . . Bma12g01260 Cmo13g00999 . . . . . . Cpe20g00175 . . . . . . . . . . . . . . . . . . . . Csa01g00747 Chy12g01365 Cme12g01797 Blo13g00102 . . . Bpe07g01067 . . . . . . Cma13g00964 . . Car18g00086 Cpe09g01094 . Bhi08g01341 Tan05g2147 . Lac10g0321 . . . Cla01g01465 Cam01g1533 Cec01g1573 Cco01g1620 Clacu01g1557 Cmu01g1447 Cre01g1369 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004117 1 3 3 1 3 1 1 1 1 1 1 1 1 1 1 1 1 4 2 1 1 1 1 1 1 0 1 5 3 0 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g00964 Cma_Chr13 FPKM 22.842546 23.58989 24.90661 24.993917 21.950863 20.626842 21.018772 24.083885 23.036259 20.049213