Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00972 ATGCTGGCTGATCTCTCCTCCCCTTCCCTTCCTTGCTTTGAGCCTTTGCCTAATTGCTTTGAAAGCAATGGAACCAATACCAAAAGAAAAAGAAGGCCTGCTGGGACTCCAGACCCAGATGCCGAAGTCGTTTCTCTTTCTCCCAAAACCCTATTGGAATCAGATCGTTACGTTTGCGAGATCTGTAATCAAGGGTTTCAAAGAGATCAAAATCTACAAATGCATCGACGTCGACACAAGGTGCCGTGGAAGCTCTTGAAGAGAACCGAGCCGACAACCGCGGTTAGAAAACGAGTCTTCGTCTGCCCCGAACCGAGCTGTTTACACCATAACCCTACTCATGCTTTGGGGGATTTGGTGGGAATAAAGAAACACTTTAGAAGAAAACATAGTAACCATAAGCAATGGGTTTGTGAGAAATGCTCTAAAGGCTATGCTGTTCAATCCGATTACAAAGCTCATCTAAAAACATGTGGAACTCGAGGCCATTCCTGCGATTGTGGTCGGGTTTTCTCAAGGGTGGAGAGCTTCATAGAACATCAAGATAGCTGCAAATTGGGTCATCATCATCAACAATCAGAACAAAAGCTTCCATGTTTATCAAGAACAGCTTCAAGTCCAACTCCAAGCCCTTCTTCAGATACAAATTTCAGCTTCTTCAACAAAAACCATACAATAATTCCCCAAAGGATCATTACTCACCATCCACAAAACTTGGAACTTCAACTCTCCAACAATTCAACTTCCATTCACTTATCCGTTTCGCCGAAACGACGCGAAAATTACTCGACCCATTTACAGCTTTCGATTGGTTCGTGCAATTACGATGAGAAAAACGACGATGGGGACGACGATCACGACGAGAAAACAGGAAATGGGTTGGATTTTTTTAAGGTAAAAGAGGAAGCTAAAGAGCAAATGAGAGTAGCAATGGAAGAGAAAGCTATAGCTGAAGAAGCAAGAAACGAAGCAAAGAAGCAAATTGAAATAGCTGAAAAAGAGTTAGCCAATGCGAAGAGAATGAGACAAGAAGCACAAGGTGAGCTACAACGAGCTCTTGCTTTGAAAGAACATGCCATGAAGCAAATCAACTCCACCATTCTTCAAATCACTTGTCAAGTTTGTAGGCAACATTTTGAGCCATTCCCAACAATTTGA 1158 42.66 MLADLSSPSLPCFEPLPNCFESNGTNTKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRTEPTTAVRKRVFVCPEPSCLHHNPTHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDSCKLGHHHQQSEQKLPCLSRTASSPTPSPSSDTNFSFFNKNHTIIPQRIITHHPQNLELQLSNNSTSIHLSVSPKRRENYSTHLQLSIGSCNYDEKNDDGDDDHDEKTGNGLDFFKVKEEAKEQMRVAMEEKAIAEEARNEAKKQIEIAEKELANAKRMRQEAQGELQRALALKEHAMKQINSTILQITCQVCRQHFEPFPTI 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7575429 7577468 + CmaCh13G009720.1 Cma13g00972 306799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00972 385 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Cma13g00972 385 SMART c2h2final6 136 163 IPR013087 -
Cma13g00972 385 SMART c2h2final6 57 79 IPR013087 -
Cma13g00972 385 SMART c2h2final6 100 130 IPR013087 -
Cma13g00972 385 PANTHER OS03G0310200 PROTEIN 14 380 IPR039288 GO:0009630
Cma13g00972 385 MobiDBLite consensus disorder prediction 195 217 - -
Cma13g00972 385 MobiDBLite consensus disorder prediction 23 43 - -
Cma13g00972 385 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Cma13g00972 385 Coils Coil 300 362 - -
Cma13g00972 385 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 14 380 - -
Cma13g00972 385 SUPERFAMILY beta-beta-alpha zinc fingers 56 156 IPR036236 -
Cma13g00972 385 Gene3D Classic Zinc Finger 35 100 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma13g00972 Cma18g00089 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00972 Cma-Chr13:7575429 Cma15g00878 Cma-Chr15:4451639 1.15E-134 dispersed
Cma01g00749 Cma-Chr1:4020016 Cma13g00972 Cma-Chr13:7575429 1.82E-160 transposed
Cma13g01152 Cma-Chr13:8463470 Cma13g00972 Cma-Chr13:7575429 1.88E-167 transposed
Cma13g00972 Cma-Chr13:7575429 Cma18g00089 Cma-Chr18:406361 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36134 None None None None Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00972 K25871 - csv:101210748 646.736