Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00976 ATGGCTCTGGTTCGTGATCGCCGCCAGTTGAACCTCCGCCTCCCCGACCTCTCCGACTGCCGTCCCCGTTTCCCTCTCCCACTCCCTCCATCCTCCGCTGCTGCTCCTGCCGCTACAGCCGCCGCCGCCGCTCCCGCTGCCTCCGACCTCGAAAAGCTTCAAGTCCTCGGCCATGGCAACGGCGGCACCGTCTACAAAGTCCGCCACAAGCGTACCTCCGCAACCTACGCTCTCAAGGTTGTCCACGGCGACTGCGATCCAACCGTCCGTCGCCAGGTTTTCAGAGAGATGGAGATTCTACGCCGTACCGACTCTCCCTATGTCGTTCAGTGCCATGGAATCTTCGAGAAGCCGTCTGGAGACGTTACGATTTTGATGGAGTATATGGATCTAGGATCGCTTGATTCGCTCTTGAAGAAGAACTCGACGTTGTCAGAATCGACGCTCGCTCACGTCGCGCGTCAGGTTCTTAACGGACTTCACTACCTTCACTCTCACAAAATCATTCATCGCGATATTAAGCCGTCGAATCTGTTGGTGAATAAGAATATGGAGGTTAAGATTGCCGATTTTGGAGTTAGTAAGATCATGTGCCGAACTTTGGATGCTTGCAATTCCTACGTCGGAACCTGCGCTTATATGAGTCCGGAGCGGTTCGATCCGGACACTTACGGCGGAAATTACAACGGTTACGCCGGTGACATATGGAGTTTGGGGCTTACTCTTCTGGAGCTCTATTTAGGTCATTTTCCTTTCCTACCGCCTGGTCAGAGACCAGATTGGGCGACTCTGATGTGTGCGATTTGCTTCGGCGAACCGCCGACGCTGCCGGAGGACGCGTCGGAGGACTTTCGGAGCTTCGTCGAGTGTTGCTTGCAAAAGGAATCGAGCAAGAGGTGGACGGTGGCGCAGTTGTTGACACATCCGTTTGTGTGCAAGGAATCGAGATCTGATCGGTGA 960 54.69 MALVRDRRQLNLRLPDLSDCRPRFPLPLPPSSAAAPAATAAAAAPAASDLEKLQVLGHGNGGTVYKVRHKRTSATYALKVVHGDCDPTVRRQVFREMEILRRTDSPYVVQCHGIFEKPSGDVTILMEYMDLGSLDSLLKKNSTLSESTLAHVARQVLNGLHYLHSHKIIHRDIKPSNLLVNKNMEVKIADFGVSKIMCRTLDACNSYVGTCAYMSPERFDPDTYGGNYNGYAGDIWSLGLTLLELYLGHFPFLPPGQRPDWATLMCAICFGEPPTLPEDASEDFRSFVECCLQKESSKRWTVAQLLTHPFVCKESRSDR 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7605521 7606480 + CmaCh13G009760.1 Cma13g00976 306803

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00976 319 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Cma13g00976 319 ProSiteProfiles Protein kinase domain profile. 50 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00976 319 Pfam Protein kinase domain 51 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00976 319 Gene3D Transferase(Phosphotransferase) domain 1 132 319 - -
Cma13g00976 319 SUPERFAMILY Protein kinase-like (PK-like) 48 313 IPR011009 -
Cma13g00976 319 Gene3D Phosphorylase Kinase; domain 1 33 130 - -
Cma13g00976 319 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 5 316 - -
Cma13g00976 319 PANTHER SERINE/THREONINE-PROTEIN KINASE C01C4.3-RELATED 5 316 - -
Cma13g00976 319 ProSitePatterns Protein kinases ATP-binding region signature. 56 79 IPR017441 GO:0005524
Cma13g00976 319 SMART serkin_6 50 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00976 319 CDD PKc_MAPKK_plant_like 49 311 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00976 K20604 MKK9; mitogen-activated protein kinase kinase 9 [EC:2.7.12.2] - csv:101203133 569.696
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00023 Cma-Chr1:99519 Cma13g00976 Cma-Chr13:7605521 3.27E-96 dispersed
Cma13g00976 Cma-Chr13:7605521 Cma14g01229 Cma-Chr14:9753485 6.03E-108 dispersed
Cma13g00976 Cma-Chr13:7605521 Cma18g00086 Cma-Chr18:383549 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g168 . . . . . . . . Cmo13g01011 . . . . . . Cpe20g00165 . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01809 . . . . . . . . Cma13g00976 . . . . . Bhi08g01328 . . . . . . Cla04g01028 Cam04g1070 Cec01g1584 Cco01g1633 Clacu04g1097 Cmu04g1081 Cre01g1381 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma10g00741 CST 28 353 MAP Kinase Kinase Gene Family AT4G26070 70.5 1.5e-135 479.9
Cma12g01322 . 60 384 MAP Kinase Kinase Gene Family AT4G26070 67.8 2.5e-127 452.6
Cma11g00712 CST 28 326 MAP Kinase Kinase Gene Family AT4G26070 69.2 2.1e-121 433.0
Cma12g01275 CST 26 346 MAP Kinase Kinase Gene Family AT4G26070 55.0 6.7e-104 374.8
Cma05g01373 CST 136 427 MAP Kinase Kinase Gene Family AT4G26070 57.3 6.9e-101 364.8
Cma10g00741 CST 1 326 MAP Kinase Kinase Gene Family AT4G29810 69.6 4.7e-134 474.9
Cma11g00712 CST 1 327 MAP Kinase Kinase Gene Family AT4G29810 67.0 2.4e-130 462.6
Cma12g01322 . 34 358 MAP Kinase Kinase Gene Family AT4G29810 63.1 9.9e-116 414.1
Cma12g01275 CST 10 321 MAP Kinase Kinase Gene Family AT4G29810 59.1 2.2e-107 386.3
Cma05g01373 CST 128 400 MAP Kinase Kinase Gene Family AT4G29810 61.9 1.2e-100 364.0
Cma14g00668 . 36 518 MAP Kinase Kinase Gene Family AT5G40440 79.9 1.2e-229 793.1
Cma14g01229 . 1 365 MAP Kinase Kinase Gene Family AT1G51660 67.7 3.7e-132 468.8
Cma01g00023 . 1 371 MAP Kinase Kinase Gene Family AT1G51660 70.0 3.2e-128 455.7
Cma13g00976 . 48 317 MAP Kinase Kinase Gene Family AT1G51660 54.8 1.6e-82 303.9
Cma18g00086 . 31 306 MAP Kinase Kinase Gene Family AT1G51660 54.7 7.7e-82 301.6
Cma14g01229 . 1 365 MAP Kinase Kinase Gene Family AT3G21220 64.5 6.1e-129 458.0
Cma01g00023 . 1 371 MAP Kinase Kinase Gene Family AT3G21220 68.5 1.0e-128 457.2
Cma13g00976 . 48 313 MAP Kinase Kinase Gene Family AT3G21220 54.9 1.0e-83 307.8
Cma18g00086 . 35 304 MAP Kinase Kinase Gene Family AT3G21220 55.2 2.5e-82 303.1
Cma12g01275 CST 1 346 MAP Kinase Kinase Gene Family AT5G56580 82.9 1.6e-164 576.2
Cma05g01373 CST 131 430 MAP Kinase Kinase Gene Family AT5G56580 84.7 3.9e-147 518.5
Cma10g00741 CST 7 352 MAP Kinase Kinase Gene Family AT5G56580 59.1 1.3e-118 423.7
Cma11g00712 CST 7 328 MAP Kinase Kinase Gene Family AT5G56580 58.5 2.5e-109 392.9
Cma12g01322 . 34 383 MAP Kinase Kinase Gene Family AT5G56580 55.1 2.3e-107 386.3
Cma13g00976 . 1 311 MAP Kinase Kinase Gene Family AT1G18350 62.8 2.6e-107 386.0
Cma18g00086 . 1 302 MAP Kinase Kinase Gene Family AT1G18350 64.0 2.4e-105 379.4
Cma01g00023 . 79 338 MAP Kinase Kinase Gene Family AT1G18350 52.8 3.1e-76 282.7
Cma13g00976 . 1 299 MAP Kinase Kinase Gene Family AT3G06230 50.5 2.2e-79 293.1
Cma18g00086 . 1 290 MAP Kinase Kinase Gene Family AT3G06230 50.2 2.3e-76 283.1
Cma13g00976 . 1 311 MAP Kinase Kinase Gene Family AT1G73500 66.3 1.4e-113 406.8
Cma18g00086 . 1 302 MAP Kinase Kinase Gene Family AT1G73500 65.5 1.7e-109 393.3
Cma01g00023 . 79 338 MAP Kinase Kinase Gene Family AT1G73500 52.8 1.7e-77 287.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011011 1 1 0 0 0 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69027 PF00069 Pkinase 2.70E-65 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g00976 Cma_Chr13 FPKM 76.769791 82.902908 101.909447 99.574974 58.289188 57.21566 58.889511 320.903656 332.805786 327.078186