Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00976 ATGGCTCTGGTTCGTGATCGCCGCCAGTTGAACCTCCGCCTCCCCGACCTCTCCGACTGCCGTCCCCGTTTCCCTCTCCCACTCCCTCCATCCTCCGCTGCTGCTCCTGCCGCTACAGCCGCCGCCGCCGCTCCCGCTGCCTCCGACCTCGAAAAGCTTCAAGTCCTCGGCCATGGCAACGGCGGCACCGTCTACAAAGTCCGCCACAAGCGTACCTCCGCAACCTACGCTCTCAAGGTTGTCCACGGCGACTGCGATCCAACCGTCCGTCGCCAGGTTTTCAGAGAGATGGAGATTCTACGCCGTACCGACTCTCCCTATGTCGTTCAGTGCCATGGAATCTTCGAGAAGCCGTCTGGAGACGTTACGATTTTGATGGAGTATATGGATCTAGGATCGCTTGATTCGCTCTTGAAGAAGAACTCGACGTTGTCAGAATCGACGCTCGCTCACGTCGCGCGTCAGGTTCTTAACGGACTTCACTACCTTCACTCTCACAAAATCATTCATCGCGATATTAAGCCGTCGAATCTGTTGGTGAATAAGAATATGGAGGTTAAGATTGCCGATTTTGGAGTTAGTAAGATCATGTGCCGAACTTTGGATGCTTGCAATTCCTACGTCGGAACCTGCGCTTATATGAGTCCGGAGCGGTTCGATCCGGACACTTACGGCGGAAATTACAACGGTTACGCCGGTGACATATGGAGTTTGGGGCTTACTCTTCTGGAGCTCTATTTAGGTCATTTTCCTTTCCTACCGCCTGGTCAGAGACCAGATTGGGCGACTCTGATGTGTGCGATTTGCTTCGGCGAACCGCCGACGCTGCCGGAGGACGCGTCGGAGGACTTTCGGAGCTTCGTCGAGTGTTGCTTGCAAAAGGAATCGAGCAAGAGGTGGACGGTGGCGCAGTTGTTGACACATCCGTTTGTGTGCAAGGAATCGAGATCTGATCGGTGA 960 54.69 MALVRDRRQLNLRLPDLSDCRPRFPLPLPPSSAAAPAATAAAAAPAASDLEKLQVLGHGNGGTVYKVRHKRTSATYALKVVHGDCDPTVRRQVFREMEILRRTDSPYVVQCHGIFEKPSGDVTILMEYMDLGSLDSLLKKNSTLSESTLAHVARQVLNGLHYLHSHKIIHRDIKPSNLLVNKNMEVKIADFGVSKIMCRTLDACNSYVGTCAYMSPERFDPDTYGGNYNGYAGDIWSLGLTLLELYLGHFPFLPPGQRPDWATLMCAICFGEPPTLPEDASEDFRSFVECCLQKESSKRWTVAQLLTHPFVCKESRSDR 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7605521 7606480 + CmaCh13G009760.1 Cma13g00976 306803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00976 319 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Cma13g00976 319 ProSiteProfiles Protein kinase domain profile. 50 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00976 319 Pfam Protein kinase domain 51 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00976 319 Gene3D Transferase(Phosphotransferase) domain 1 132 319 - -
Cma13g00976 319 SUPERFAMILY Protein kinase-like (PK-like) 48 313 IPR011009 -
Cma13g00976 319 Gene3D Phosphorylase Kinase; domain 1 33 130 - -
Cma13g00976 319 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 5 316 - -
Cma13g00976 319 PANTHER SERINE/THREONINE-PROTEIN KINASE C01C4.3-RELATED 5 316 - -
Cma13g00976 319 ProSitePatterns Protein kinases ATP-binding region signature. 56 79 IPR017441 GO:0005524
Cma13g00976 319 SMART serkin_6 50 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00976 319 CDD PKc_MAPKK_plant_like 49 311 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00023 Cma-Chr1:99519 Cma13g00976 Cma-Chr13:7605521 3.27E-96 dispersed
Cma13g00976 Cma-Chr13:7605521 Cma14g01229 Cma-Chr14:9753485 6.03E-108 dispersed
Cma13g00976 Cma-Chr13:7605521 Cma18g00086 Cma-Chr18:383549 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69027 PF00069 Pkinase 2.70E-65 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00976 K20604 - csv:101203133 569.696