Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma13g00976 | ATGGCTCTGGTTCGTGATCGCCGCCAGTTGAACCTCCGCCTCCCCGACCTCTCCGACTGCCGTCCCCGTTTCCCTCTCCCACTCCCTCCATCCTCCGCTGCTGCTCCTGCCGCTACAGCCGCCGCCGCCGCTCCCGCTGCCTCCGACCTCGAAAAGCTTCAAGTCCTCGGCCATGGCAACGGCGGCACCGTCTACAAAGTCCGCCACAAGCGTACCTCCGCAACCTACGCTCTCAAGGTTGTCCACGGCGACTGCGATCCAACCGTCCGTCGCCAGGTTTTCAGAGAGATGGAGATTCTACGCCGTACCGACTCTCCCTATGTCGTTCAGTGCCATGGAATCTTCGAGAAGCCGTCTGGAGACGTTACGATTTTGATGGAGTATATGGATCTAGGATCGCTTGATTCGCTCTTGAAGAAGAACTCGACGTTGTCAGAATCGACGCTCGCTCACGTCGCGCGTCAGGTTCTTAACGGACTTCACTACCTTCACTCTCACAAAATCATTCATCGCGATATTAAGCCGTCGAATCTGTTGGTGAATAAGAATATGGAGGTTAAGATTGCCGATTTTGGAGTTAGTAAGATCATGTGCCGAACTTTGGATGCTTGCAATTCCTACGTCGGAACCTGCGCTTATATGAGTCCGGAGCGGTTCGATCCGGACACTTACGGCGGAAATTACAACGGTTACGCCGGTGACATATGGAGTTTGGGGCTTACTCTTCTGGAGCTCTATTTAGGTCATTTTCCTTTCCTACCGCCTGGTCAGAGACCAGATTGGGCGACTCTGATGTGTGCGATTTGCTTCGGCGAACCGCCGACGCTGCCGGAGGACGCGTCGGAGGACTTTCGGAGCTTCGTCGAGTGTTGCTTGCAAAAGGAATCGAGCAAGAGGTGGACGGTGGCGCAGTTGTTGACACATCCGTTTGTGTGCAAGGAATCGAGATCTGATCGGTGA | 960 | 54.69 | MALVRDRRQLNLRLPDLSDCRPRFPLPLPPSSAAAPAATAAAAAPAASDLEKLQVLGHGNGGTVYKVRHKRTSATYALKVVHGDCDPTVRRQVFREMEILRRTDSPYVVQCHGIFEKPSGDVTILMEYMDLGSLDSLLKKNSTLSESTLAHVARQVLNGLHYLHSHKIIHRDIKPSNLLVNKNMEVKIADFGVSKIMCRTLDACNSYVGTCAYMSPERFDPDTYGGNYNGYAGDIWSLGLTLLELYLGHFPFLPPGQRPDWATLMCAICFGEPPTLPEDASEDFRSFVECCLQKESSKRWTVAQLLTHPFVCKESRSDR | 319 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 7605521 | 7606480 | + | CmaCh13G009760.1 | Cma13g00976 | 306803 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma13g00976 | 319 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 168 | 180 | IPR008271 | GO:0004672|GO:0006468 | |
Cma13g00976 | 319 | ProSiteProfiles | Protein kinase domain profile. | 50 | 311 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma13g00976 | 319 | Pfam | Protein kinase domain | 51 | 311 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma13g00976 | 319 | Gene3D | Transferase(Phosphotransferase) domain 1 | 132 | 319 | - | - | |
Cma13g00976 | 319 | SUPERFAMILY | Protein kinase-like (PK-like) | 48 | 313 | IPR011009 | - | |
Cma13g00976 | 319 | Gene3D | Phosphorylase Kinase; domain 1 | 33 | 130 | - | - | |
Cma13g00976 | 319 | PANTHER | MITOGEN-ACTIVATED KINASE KINASE KINASE | 5 | 316 | - | - | |
Cma13g00976 | 319 | PANTHER | SERINE/THREONINE-PROTEIN KINASE C01C4.3-RELATED | 5 | 316 | - | - | |
Cma13g00976 | 319 | ProSitePatterns | Protein kinases ATP-binding region signature. | 56 | 79 | IPR017441 | GO:0005524 | |
Cma13g00976 | 319 | SMART | serkin_6 | 50 | 311 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma13g00976 | 319 | CDD | PKc_MAPKK_plant_like | 49 | 311 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g00023 | Cma-Chr1:99519 | Cma13g00976 | Cma-Chr13:7605521 | 3.27E-96 | dispersed | |
Cma13g00976 | Cma-Chr13:7605521 | Cma14g01229 | Cma-Chr14:9753485 | 6.03E-108 | dispersed | |
Cma13g00976 | Cma-Chr13:7605521 | Cma18g00086 | Cma-Chr18:383549 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
69027 | PF00069 | Pkinase | 2.70E-65 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma13g00976 | K20604 | - | csv:101203133 | 569.696 |