Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00981 ATGGAATGCTTACACGCTCAGCTATGGCTTTCCTTTTCTCTATCCATTTCTCTCTCTGACCGACAGCACACAATTTGCAGCTTCCCCAGCTCATACTCTACCCTTTTTTCTAGTTCTATCGCTCTCTCTTTTCAATCTTCCAACCAATGCCTTGCGAACCTTATTGGGTTTCGGAATTTTTGTGATCAGAGTCCCCCGTTTGGAAGAATCTCAACTGGGTTTTGCTCTAAACATCTCAGAATGCGAACCCAGATGGGAACTCGTTTGCTTGCTCTGTTTCTTTTGGGGTTCTGTGTTCTACTATCTACTGTGATGCCAGATCTTGGCTCTGATAGAACAGCTCTGTTGGCCCTTCGCTCTGCTGTGGGTGGCCGAACTCTTCGGCTCTGGAATGTGACTGATCAGAATCACTGTTCTTGGCCTGGGATTCAATGCGAGGACAATCGTGTCACTGTTCTGCGTCTTCCCGGAGAGGCGCTTTTTGGTCAATTACCGACCGGCATTTTTGGGAACTTGACTCAGCTTCGCACTCTCAGCCTTCGGCTCAACGCCCTTTCCGGCCCACTCCCATCAGATCTCTCTGCCTGCATTAATCTTCGCAACCTCTATTTGCAAGGTAATGAGTTTGCAGGTCTTGTCCCTGATTTCTTGTTCCAGCTTCATGATCTTGTTCGTCTTAATTTGGCGTCCAATAACTTTTCTGGGGAGATCTCTTCTGGGTTCAACAATTTGACCCGTCTTAGGACACTGTTCCTCGAGAACAATCGCCTGTCTGGGTCTATCCCGGATTTGAAGATCCCTATGGATCAGTTCAATGTTTCTAACAATCAATTAAATGGGTCGGTTCCAAAGGGATTACAGTCGTTTTCTTCGCGTTCCTTTTCGGGCAATTCTCTCTGCGGCCGCCCTCTAGAGGCTTGCGTTGGTGATCTTGTTGTGCCGACTGGGGAGGTTGGGGACAATGGTGGCTCTGGACACAAGAAAAAGCTGTCGGGGGGAGCCATTGCTGGGATTATCATTGGATCTGTACTGGGTTTTGTATTGATACTTGTAATCTTAATGCTTTTGTGCCGAAAGAAAAGTGCCAAGCAAACGAGTTCAGTCGATTTAGCCACAGTGAAGGTTCCTGAAGTTGAAGTTCAGGCGGTTAAGCCAGTCGGCGATATCGAAAATGGCGGTCATAGTGATGGTTTTACTGTACCAGCCACTGCCACTGCCACTGCCACTGCTGCTGCAACAGCGGCGGCGGGAACAGTGAATGGCAATGGAACTGGGTCTATAAAATTGGTGTTTTTTGGTAATGCTGCAAGGGTTTTTGATTTGGAGGATCTTTTGAGGGCTTCAGCCGAAGTGTTGGGGAAAGGAACCTTTGGGACTGCTTACAAAGCTGCATTGGAAGTGGGTTCTGTAGTGGCTGTGAAGAGGTTGAAGGATGTCACCATAACTGAGAGGGAATTCAGAGAGAAGGTTGAAGCTGTTGGTTCTATGGATCATGAAAACTTGGTCCCTCTCCGGGCTTACTATTTCAGTGCTGATGAGAAGCTTATTGTCTATGATTACATGCCCATGGGAAGCTTATCTGCTCTTCTACACGGAAACAAAGGAGCTGGAAGGACTCCATTGAGTTGGGAAATCAGGTCTGGAATTGCCCTTGGAGCTGCTCGTGGAATTGAATATCTGCATTCACAAGGTCCTAGTGTCTCCCATGGAAATATAAAATCTTCGAATATTCTACTAACCAAATCCTATGATGCTCGAGTCTCCGATTTCGGTTTAGCGCATCTTGTTGGACCATCTTCCAGCCCCAACAGAGTAGTTGGTTACCGTGCACCAGAGGTCACTGATCCTCGTAAAGTATCTCATAAGGCTGATGTGTATAGTTTTGGCGTATTGCTATTGGAGCTTTTGACAGGAAAGGCTCCTACCTACTCCCTTTTGAATGAGGAAGGAGTTGATTTACCTAGATGGGTGCAGTCAGTTGTTAGGGAGGAATGGACTTCTGAAGTTTTCGACCTCGAACTTCTTAGGTACCAAAACATCGAGGAGGAAATGGTTCAACTATTGCAGCTTGCAGTCGATTGCGCAGCTCAGTATCCTGATAAGCGCCCCACAATGTCCGAAGTCACAAAGCGTATAGAAGAGCTTCGCCAATCCAGCCTACACGAAGTTGTCAATCCACAACCCGACGCTGCTCGTGAATCAGACGACATGTCTTCTAGGTGA 2223 47.19 MECLHAQLWLSFSLSISLSDRQHTICSFPSSYSTLFSSSIALSFQSSNQCLANLIGFRNFCDQSPPFGRISTGFCSKHLRMRTQMGTRLLALFLLGFCVLLSTVMPDLGSDRTALLALRSAVGGRTLRLWNVTDQNHCSWPGIQCEDNRVTVLRLPGEALFGQLPTGIFGNLTQLRTLSLRLNALSGPLPSDLSACINLRNLYLQGNEFAGLVPDFLFQLHDLVRLNLASNNFSGEISSGFNNLTRLRTLFLENNRLSGSIPDLKIPMDQFNVSNNQLNGSVPKGLQSFSSRSFSGNSLCGRPLEACVGDLVVPTGEVGDNGGSGHKKKLSGGAIAGIIIGSVLGFVLILVILMLLCRKKSAKQTSSVDLATVKVPEVEVQAVKPVGDIENGGHSDGFTVPATATATATAAATAAAGTVNGNGTGSIKLVFFGNAARVFDLEDLLRASAEVLGKGTFGTAYKAALEVGSVVAVKRLKDVTITEREFREKVEAVGSMDHENLVPLRAYYFSADEKLIVYDYMPMGSLSALLHGNKGAGRTPLSWEIRSGIALGAARGIEYLHSQGPSVSHGNIKSSNILLTKSYDARVSDFGLAHLVGPSSSPNRVVGYRAPEVTDPRKVSHKADVYSFGVLLLELLTGKAPTYSLLNEEGVDLPRWVQSVVREEWTSEVFDLELLRYQNIEEEMVQLLQLAVDCAAQYPDKRPTMSEVTKRIEELRQSSLHEVVNPQPDAARESDDMSSR 740
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7624942 7628187 + CmaCh13G009810.1 Cma13g00981 306808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00981 740 ProSitePatterns Protein kinases ATP-binding region signature. 452 474 IPR017441 GO:0005524
Cma13g00981 740 Pfam Protein kinase domain 449 710 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00981 740 CDD STKc_IRAK 452 715 - -
Cma13g00981 740 ProSiteProfiles Protein kinase domain profile. 446 724 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00981 740 Gene3D Phosphorylase Kinase; domain 1 419 520 - -
Cma13g00981 740 SUPERFAMILY L domain-like 127 291 - -
Cma13g00981 740 PANTHER OS05G0588300 PROTEIN 91 735 - -
Cma13g00981 740 SUPERFAMILY Protein kinase-like (PK-like) 450 712 IPR011009 -
Cma13g00981 740 Pfam Leucine rich repeat 198 257 IPR001611 GO:0005515
Cma13g00981 740 Gene3D Ribonuclease Inhibitor 224 307 IPR032675 -
Cma13g00981 740 PANTHER INACTIVE RECEPTOR KINASE-RELATED 91 735 - -
Cma13g00981 740 Gene3D Ribonuclease Inhibitor 110 221 IPR032675 -
Cma13g00981 740 MobiDBLite consensus disorder prediction 718 740 - -
Cma13g00981 740 Gene3D Transferase(Phosphotransferase) domain 1 521 735 - -
Cma13g00981 740 Pfam Leucine rich repeat N-terminal domain 109 145 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00981 Cma-Chr13:7624942 Cma14g00829 Cma-Chr14:4231658 0 dispersed
Cma01g00744 Cma-Chr1:3967055 Cma13g00981 Cma-Chr13:7624942 0 transposed
Cma13g00981 Cma-Chr13:7624942 Cma18g00081 Cma-Chr18:358045 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69028 PF00069 Pkinase 4.50E-39 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00981 - - csv:101222458 1114.37