Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00982 ATGGAGAGAGATTTCTTAGGTTTGAACTCGAAGATTGTGTCTATGGCTTTGAAAGAAGAATTTGAAGATGCTTCCAAAAATACAGGTATGCAGTGGTCGTTCTCCAACAAGGTCTCCGCTGTTCCCCAATTGCTGTCTTTCAAGGCCGCTCAAGATGAGAAACAAAGGAAAATTACTGTCGACCCACTTGGCCCTTATTCCTCTGTAATTCAGAAGAATGTAGCCCCTGATAAGAAGCCTGCAAACCAGTATGCAATGACAGCGTACCGTTTCCAAAACGCCGACCCTGTGGTTCGTTCCAGTGTTAACTTGCAGCCGTTAGGTGGGGTTCCGATTCCCACCGCCATTTCTGCTCCTTTGACGAGCTCTGTAGTCGGTACTACCGAGTTAAGGAATGCTTCAATGCCTCTCGGTTCGATGGCGCAGCTGACAATCTTCTATGCGGGATCCGTGTGTGTTTATAATGATATATCTCCTGAGAAGGCTCAGGCTATTATGCTTCTGGCTGGTAGCAAAGGGATGCCTCAAACACAAAACAACATGCTTTCCACAGGTCAGGTGAAAGCATCATTCCCTTGTAGTAACATTGAGCTCCCTGCTGCTGCTGCTGCTGCTGCTGCTGCTAAACCTATACATTCAGAACCTCCCATGGATGCCAGTTCCGCTGCACTGATTGCCTCGATTGCTCCGACATTCGTTCCTGCAGCTGTGCCTCAGGCTCGAAAGGCATCGTTAGTTCGGTTTTTAGAGAAGCGCAAGGAACGGATAAACACTTGCCCATACAGTATTGCAAAGAAACCGTCAGACTGCTCGTCCACAACGTTGGATCTGATGGCCTGA 840 48.1 MERDFLGLNSKIVSMALKEEFEDASKNTGMQWSFSNKVSAVPQLLSFKAAQDEKQRKITVDPLGPYSSVIQKNVAPDKKPANQYAMTAYRFQNADPVVRSSVNLQPLGGVPIPTAISAPLTSSVVGTTELRNASMPLGSMAQLTIFYAGSVCVYNDISPEKAQAIMLLAGSKGMPQTQNNMLSTGQVKASFPCSNIELPAAAAAAAAAKPIHSEPPMDASSAALIASIAPTFVPAAVPQARKASLVRFLEKRKERINTCPYSIAKKPSDCSSTTLDLMA 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7631399 7634269 + CmaCh13G009820.1 Cma13g00982 306809

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00982 279 ProSiteProfiles Tify domain profile. 136 171 IPR010399 -
Cma13g00982 279 SMART tify_2 136 171 IPR010399 -
Cma13g00982 279 Pfam Jas motif 238 261 IPR018467 -
Cma13g00982 279 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 111 275 IPR040390 -
Cma13g00982 279 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 22 94 IPR040390 -
Cma13g00982 279 Pfam tify domain 141 170 IPR010399 -
Cma13g00982 279 PANTHER PROTEIN TIFY 7 22 94 - -
Cma13g00982 279 PANTHER PROTEIN TIFY 7 111 275 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00982 K13464 JAZ; jasmonate ZIM domain-containing protein - csv:101222222 349.362
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00811 Cma-Chr8:4904162 Cma13g00982 Cma-Chr13:7631399 1.55E-10 dispersed
Cma13g00982 Cma-Chr13:7631399 Cma17g00674 Cma-Chr17:5642025 1.02E-11 dispersed
Cma13g00982 Cma-Chr13:7631399 Cma18g00080 Cma-Chr18:345525 6.77E-130 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g188 . . . . . . . . Cmo13g01016 . . . . . . . . . . . . . . . . . . . . . . Cone2ag0772 . . . . . . . . . . . . . . Bma08g00104 . . . Cma13g00982 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001064 2 5 0 2 2 2 4 2 2 1 2 2 4 2 2 4 2 5 4 2 2 2 2 2 2 2 2 11 3 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36136 PF06200 tify 3.40E-17 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g00982 Cma_Chr13 FPKM 10.431907 10.319372 8.560637 7.264361 39.482365 42.143871 41.767044 5.182281 4.636621 4.522726