Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00986 ATGTTCTTGAAAAATTCAATCCCAATGCAGATTAGGATGCAACTGCAAGCTCGTAGGCTTCAGTTAATTTTCTTAATTATATGTCTATGCTCTTTTTTCATCAACGCTCGTCCGTTTCTCATTGTCATCTCTCAAGATGACCTCAAGGATGCTGCGTCGCCCGACGACTCCTCCGATTCAGCGAACTACGAATCCGCCGAGTGGGACGAGTTCGGGGAGCCTGAATCTCAAAACGCCGCCCAGGAGCTTGACCCCGGTACTTGGCGCCCGATTTTTGAACCGGATTCTCCCGCCTCTGACCCCGACGCGCCGGAGGATCTGTACTACACTGCGTTAGGGAAGATGATGACAGCGGTGAGCTCTGGGGACCTGAGGTTGATGGAGGATGCGGTAGGGGATATTGATCAAGTTGCGGTGGAGAGTGGGGATCCGCACGCGCAATCGGTGTTAGGGTTATTGTATGGAATGGGGATAATGAAGGAGACGAATAAGGCTAAGGCGTTTATGTATCATTATTTTGCCGCGGAAGGGAATAAGCAATCTAAGATGGCTCTTGCATATAGTTACTTCAGGCAAGAAGCATATATGGATTTGATATTCTTTTACTCGTCGTGTTTCCAATGCGTAATTCTGTCTTGGTTGCAGATGTATGAAAAAGCAGTCAAGCTTTATGCTGAGTTAGCAGAGGTAGCCATTAATAGTTTATTAGTTTCCAAGGATTCTCCAGTAATTGAACCTGTGAGGATCCATAATGGAGCAGAGGAGAACAAGCAGGCCTTGAGAAAGTCTCGAGGAGAGGAGGACGAGGACTTCCAAATTTTGGAATATCAGGCGCAGAAGGGTAATGCTGGAGCCATGTATAGAATTGGGCTATTTTACTACTTTGGACTGAGAGGGTTGAGGCGTGATCATGCAAAAGCATTGATCTGGTTTGCCAAGGCCGTGGATAAAGGTGAACCAAAGTCTATGGAACTACTTGGAGAGATATATGCAAGGGGCGCCGGAGTCGAAAGGGATTATACTAAGGCACTTCAATGGCTAACTCGTGCATCCAAGCATCCATCATTTTCTGCTTATAATGGCATAGGATATTTATACGTTAAGGGTTATGGAGTGGAGAAAAACTTTACCAAGGCCAAGGAGTACTTTGAAAAGGCTGCCAATAACGACGAGTCTGGTGGTCATTATAATCTAGGAGTTATGTATCTTAAAGGAATTGGGGTAAAGAGAGATGTGAAGAAGGCATGTACTCATTTTATAGTGGCTGCAAATGCTGGACAACCAAAGGCATTCTACCAGCTGGCAAAAATGTTTCATACTGGTGTTGGGCTCAAGAGGAATATTCCTATGTTGACCTGGGCTAGTGCTTTATACAAATTAGTAGCTGAACGAGGGCCTTGGAGTTCATTGTCTAGATGGGCATTGGAATCATATCTGAAAAGTGATATTGGCAAGGCATTCTTCTTGTACGCAAGAATGGCTGAGCTAGGATATGAGGTGGCACAAAGCAATGCAGCATGGATACTTGACAAATATGGAGAACAAAGCATGTGTCTGGGAGAATCTGGCTTTTGCACAGATGCAGAACTACATCAGAGAGCTCATTCTCTTTGGTGGCAAGCATCCGAGCAGGGCAACGAACACGCTGCTTTACTGATTGGGGATGCATATTACTACGGACGGGGAACCGACGTAGATTATGATCGTGCTGCTGAAGCGTACATGCATGCTAAATCCCAACTAAATGCACAAGCCATGTTCAACCTTGGTTACATGCATGAACATGGTCTAGGCCTTCCGTTTGACCTTCACCTAGCCAAGCGTTACTATGACCAAGCTCTGGAACTTGATCCAGCTGCCAGGTTGCCAGTCAAGCTGGCCCTAGCAAGCCTGTGGTTAAGGAAGAATCATGCCGACAGTTTTCTGGTCCATGTGATCGATTCGTTGCCAGAAGTGTATCCAAAGATTGATGTATGGGTGGAGGATGTACTGTTGGAGGAAGGAAATGCAACAATTCTAACTCTATTTGCCTGCCTCCTCACTGTCCTATATCTTAGAGAGCGGCAACGGAGGCATGCAGTTGTTCGGGCTGCTGCTGCTGCTGCTGCTGCTGCTGAGGCTGTGCCACTCCACCCCAATGACCACGTGGCTGCACAAAATTAG 2163 46.51 MFLKNSIPMQIRMQLQARRLQLIFLIICLCSFFINARPFLIVISQDDLKDAASPDDSSDSANYESAEWDEFGEPESQNAAQELDPGTWRPIFEPDSPASDPDAPEDLYYTALGKMMTAVSSGDLRLMEDAVGDIDQVAVESGDPHAQSVLGLLYGMGIMKETNKAKAFMYHYFAAEGNKQSKMALAYSYFRQEAYMDLIFFYSSCFQCVILSWLQMYEKAVKLYAELAEVAINSLLVSKDSPVIEPVRIHNGAEENKQALRKSRGEEDEDFQILEYQAQKGNAGAMYRIGLFYYFGLRGLRRDHAKALIWFAKAVDKGEPKSMELLGEIYARGAGVERDYTKALQWLTRASKHPSFSAYNGIGYLYVKGYGVEKNFTKAKEYFEKAANNDESGGHYNLGVMYLKGIGVKRDVKKACTHFIVAANAGQPKAFYQLAKMFHTGVGLKRNIPMLTWASALYKLVAERGPWSSLSRWALESYLKSDIGKAFFLYARMAELGYEVAQSNAAWILDKYGEQSMCLGESGFCTDAELHQRAHSLWWQASEQGNEHAALLIGDAYYYGRGTDVDYDRAAEAYMHAKSQLNAQAMFNLGYMHEHGLGLPFDLHLAKRYYDQALELDPAARLPVKLALASLWLRKNHADSFLVHVIDSLPEVYPKIDVWVEDVLLEEGNATILTLFACLLTVLYLRERQRRHAVVRAAAAAAAAAEAVPLHPNDHVAAQN 720
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7648366 7651867 + CmaCh13G009860.1 Cma13g00986 306813

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00986 720 SUPERFAMILY HCP-like 478 619 - -
Cma13g00986 720 SUPERFAMILY HCP-like 264 390 - -
Cma13g00986 720 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 16 204 - -
Cma13g00986 720 MobiDBLite consensus disorder prediction 51 103 - -
Cma13g00986 720 SUPERFAMILY HCP-like 369 506 - -
Cma13g00986 720 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 16 204 IPR044623 GO:0030433
Cma13g00986 720 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 215 698 IPR044623 GO:0030433
Cma13g00986 720 SUPERFAMILY HCP-like 137 229 - -
Cma13g00986 720 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 215 698 - -
Cma13g00986 720 Pfam Sel1 repeat 321 354 IPR006597 -
Cma13g00986 720 Pfam Sel1 repeat 549 571 IPR006597 -
Cma13g00986 720 Pfam Sel1 repeat 480 498 IPR006597 -
Cma13g00986 720 Pfam Sel1 repeat 284 318 IPR006597 -
Cma13g00986 720 Pfam Sel1 repeat 395 426 IPR006597 -
Cma13g00986 720 Pfam Sel1 repeat 583 617 IPR006597 -
Cma13g00986 720 Pfam Sel1 repeat 144 177 IPR006597 -
Cma13g00986 720 Pfam Sel1 repeat 357 390 IPR006597 -
Cma13g00986 720 SMART sel1 547 582 IPR006597 -
Cma13g00986 720 SMART sel1 320 355 IPR006597 -
Cma13g00986 720 SMART sel1 356 391 IPR006597 -
Cma13g00986 720 SMART sel1 392 427 IPR006597 -
Cma13g00986 720 SMART sel1 428 466 IPR006597 -
Cma13g00986 720 SMART sel1 144 179 IPR006597 -
Cma13g00986 720 SMART sel1 583 618 IPR006597 -
Cma13g00986 720 SMART sel1 283 319 IPR006597 -
Cma13g00986 720 Gene3D Tetratricopeptide repeat domain 254 640 IPR011990 GO:0005515
Cma13g00986 720 Gene3D Tetratricopeptide repeat domain 135 233 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00986 K14026 SEL1, SEL1L; SEL1 protein - csv:101221047 1200.65
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma13g00986 Cma18g00076 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00040 Cma-Chr5:169808 Cma13g00986 Cma-Chr13:7648366 5.13E-06 dispersed
Cma13g00986 Cma-Chr13:7648366 Cma18g00076 Cma-Chr18:332594 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g193 . . Bda06g00823 . . . . Bma12g01247 Cmo13g01021 Cmo18g00058 . . . . . Cpe20g00156 . . . . . . . . . . . . . . . . . . Cone19ag0338 Lsi02g00238 Csa01g00719 Chy12g01393 Cme12g01827 . Blo15g00056 . . Bpe07g01051 . . . Sed08g2761 . . Cma13g00986 Cma18g00076 Car13g00822 Car18g00067 Cpe09g01111 . Bhi08g01299 Tan05g2186 Cmetu12g0492 . Hepe07g2351 . . Cla04g01042 Cam04g1087 Cec01g1600 Cco01g1648 Clacu04g1113 Cmu04g1096 Cre01g1395 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006564 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g00986 Cma_Chr13 FPKM 25.749664 24.38563 19.222067 18.453686 20.877304 22.768892 20.26338 34.147011 34.63311 32.155876