Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00989 ATGGCAGGTTCATCCAAAAGTCCAGAGTGCGGCGGAGAGGGAACCCAACCTTCGTCGTCGTTAATGGATAGCTTATTGGGTCTTCTTCGGGTTCGGGTCATTCGCGGCGTCAACCTCGCCGTACGCGACGTCCGCAGCAGCGATCCTTACATTGTCGTTAAAATGTCCAAACAGAAGTTGAAGACCCGCGTGATCAAAAAGGACATCAATCCCGAATGGAACGAGGATCTCACTCTATCTGTTACAGAACCGAACGCTACAGTCAAGCTGACAGTGTACGACCACGACACGTTCAGCATGGACGACAAAATGGGAGTCGCGGAGTTCGAGATCAGACCATTCATCGAAGCATTGCAAATGAATTTAGCAGAGGTACCAAGTGGAACGGTAGTGTCAAGAGTGCAGCCAAGCAGGCAAAATTGCCTAGCTGAAGAGAGCCCCATTGTGTGGGAGGATGGCAAGGTTGTTCAAAACATTTGCCTACGCTTGCGCAACGTCGAGCGTGGCGAAGTCGAGATCCAGCTGCTATGGATCGATCTACCCGGTTCTAAAGCTGCATTGACCACGTGCTCCAAGACATGGATGGAACTGAGTGGCTACACGACGGTTGAACCTGGTAAAGAAAAGGAGCGTCTTGAGAAGATACCGGGAAAAATAAAGAAGGCTTGGGGTCCCGCGTGGCGTGTACCCGGCGTCGCTAACTATGTGAATCGCTTCAAGTCTACACTTCTTCTCCAACGCTGTTTATATAAGAAATGA 759 50.46 MAGSSKSPECGGEGTQPSSSLMDSLLGLLRVRVIRGVNLAVRDVRSSDPYIVVKMSKQKLKTRVIKKDINPEWNEDLTLSVTEPNATVKLTVYDHDTFSMDDKMGVAEFEIRPFIEALQMNLAEVPSGTVVSRVQPSRQNCLAEESPIVWEDGKVVQNICLRLRNVERGEVEIQLLWIDLPGSKAALTTCSKTWMELSGYTTVEPGKEKERLEKIPGKIKKAWGPAWRVPGVANYVNRFKSTLLLQRCLYKK 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7660727 7662216 - CmaCh13G009890.1 Cma13g00989 306816

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00989 252 Gene3D C2 domain 23 195 IPR035892 -
Cma13g00989 252 Pfam C2 domain 27 113 IPR000008 -
Cma13g00989 252 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 27 170 IPR035892 -
Cma13g00989 252 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4-LIKE 14 185 - -
Cma13g00989 252 SMART C2_3c 28 123 IPR000008 -
Cma13g00989 252 CDD C2_ArfGAP 26 169 - -
Cma13g00989 252 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 14 185 IPR044562 -
Cma13g00989 252 ProSiteProfiles C2 domain profile. 10 127 IPR000008 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00989 - - - cmax:111495729 456.447
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma13g00989 Cma18g00074 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00989 Cma-Chr13:7660727 Cma14g00837 Cma-Chr14:4298388 3.32E-79 dispersed
Cma10g00328 Cma-Chr10:1510138 Cma13g00989 Cma-Chr13:7660727 1.94E-91 wgd
Cma11g00314 Cma-Chr11:1562997 Cma13g00989 Cma-Chr13:7660727 7.41E-88 wgd
Cma13g00989 Cma-Chr13:7660727 Cma18g00074 Cma-Chr18:329922 4.16E-100 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g194 . . . . . . . . Cmo13g01025 Cmo18g00057 . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy12g01395 Cme12g01829 . . . . . . . . Sed08g2759 . . Cma13g00989 Cma18g00074 Car13g00824 Car18g00066 Cpe09g01112 . Bhi08g01295 Tan05g2189 Cmetu12g2098 Lac10g0291 Hepe07g2353 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000507 5 4 5 6 4 3 6 3 3 3 3 3 5 3 3 5 3 3 5 3 3 3 3 3 3 3 3 7 5 2 113
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g00989 Cma_Chr13 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0