Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma13g00993 | ATGTGGATGATGGGTTACAATGACGCCGGAGATTTGAACTTCCCCGCCGATTCCTTCACTCCTCGCCGCCTTAGGCCTCTCCTTCCTCGCCCTCTCTCTTCTCTTTCCTCCACCGCCGCCGTTAATCCTCCTTTCAACCTTATCCACACCAACGATTTCTTCTCCCAATTTCACCACATGGCCACCGTGACTGATCAGACCAAGAGAGAGTTGAACAACGCGCCACCGCCCGTCGTCGTCAGCTCGCGGTGGAACCCTACGCCGGAGCAGTTGAGAGTGCTGGAAGAATTGTATCGGCGGGGGACTCGAACTCCCTCCGCCGATCAAATTCAACATATCACTGCTCAGCTTCGTCGGTATGGTAAGATTGAAGGTAAGAATGTGTTCTATTGGTTTCAGAATCATAAAGCTAGAGAACGCCAGAAACGACGTCGTCAGATGGAATCCGCCATCACCGCCGACCACTCCGCTCGTGAACCCGGAATCCTTGAAAGGAAAGATTCAGGGTCGGGTAGGACAGTGTATGAAGAACAGACCAAAAACTGGGCACCCTCTTCCAACTGCACAACACTTCCGGAGGAATCTGCTCCAATTCAACCACCGTCAAGCCCTTGCACCACATAA | 624 | 52.72 | MWMMGYNDAGDLNFPADSFTPRRLRPLLPRPLSSLSSTAAVNPPFNLIHTNDFFSQFHHMATVTDQTKRELNNAPPPVVVSSRWNPTPEQLRVLEELYRRGTRTPSADQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKRRRQMESAITADHSAREPGILERKDSGSGRTVYEEQTKNWAPSSNCTTLPEESAPIQPPSSPCTT | 207 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 7684742 | 7687440 | + | CmaCh13G009930.1 | Cma13g00993 | 306820 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma13g00993 | 207 | PANTHER | WUSCHEL-RELATED HOMEOBOX 1-RELATED | 54 | 164 | IPR044555 | GO:0003700|GO:0099402 | |
Cma13g00993 | 207 | MobiDBLite | consensus disorder prediction | 139 | 207 | - | - | |
Cma13g00993 | 207 | PANTHER | WUSCHEL-RELATED HOMEOBOX 1-RELATED | 54 | 164 | - | - | |
Cma13g00993 | 207 | MobiDBLite | consensus disorder prediction | 174 | 196 | - | - | |
Cma13g00993 | 207 | SUPERFAMILY | Homeodomain-like | 81 | 148 | IPR009057 | - | |
Cma13g00993 | 207 | MobiDBLite | consensus disorder prediction | 143 | 173 | - | - | |
Cma13g00993 | 207 | Pfam | Homeodomain | 82 | 141 | IPR001356 | GO:0003677 | |
Cma13g00993 | 207 | CDD | homeodomain | 83 | 143 | IPR001356 | GO:0003677 | |
Cma13g00993 | 207 | Gene3D | - | 81 | 148 | - | - | |
Cma13g00993 | 207 | SMART | HOX_1 | 79 | 146 | IPR001356 | GO:0003677 | |
Cma13g00993 | 207 | ProSiteProfiles | 'Homeobox' domain profile. | 87 | 142 | IPR001356 | GO:0003677 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma11g00311 | Cma13g00993 | CCT | |
Cma11g00311 | Cma13g00993 | ECH | |
Cma13g00993 | Cma18g00071 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g00592 | Cma-Chr1:3110404 | Cma13g00993 | Cma-Chr13:7684742 | 1.99E-29 | dispersed | |
Cma03g00690 | Cma-Chr3:5694438 | Cma13g00993 | Cma-Chr13:7684742 | 1.82E-28 | dispersed | |
Cma05g00171 | Cma-Chr5:722174 | Cma13g00993 | Cma-Chr13:7684742 | 2.38E-30 | dispersed | |
Cma12g00562 | Cma-Chr12:2933794 | Cma13g00993 | Cma-Chr13:7684742 | 7.94E-30 | dispersed | |
Cma13g00993 | Cma-Chr13:7684742 | Cma15g00124 | Cma-Chr15:578806 | 2.18E-30 | dispersed | |
Cma14g00454 | Cma-Chr14:2171571 | Cma13g00993 | Cma-Chr13:7684742 | 1.20E-16 | dispersed | |
Cma20g00448 | Cma-Chr20:2126538 | Cma13g00993 | Cma-Chr13:7684742 | 5.52E-31 | transposed | |
Cma11g00311 | Cma-Chr11:1543460 | Cma13g00993 | Cma-Chr13:7684742 | 4.20E-48 | wgd | |
Cma13g00993 | Cma-Chr13:7684742 | Cma18g00071 | Cma-Chr18:303833 | 1.59E-96 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36137 | PF00046 | Homeodomain | 5.40E-20 | CL0123 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma13g00993 | - | - | cpep:111783016 | 382.489 |