Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00993 ATGTGGATGATGGGTTACAATGACGCCGGAGATTTGAACTTCCCCGCCGATTCCTTCACTCCTCGCCGCCTTAGGCCTCTCCTTCCTCGCCCTCTCTCTTCTCTTTCCTCCACCGCCGCCGTTAATCCTCCTTTCAACCTTATCCACACCAACGATTTCTTCTCCCAATTTCACCACATGGCCACCGTGACTGATCAGACCAAGAGAGAGTTGAACAACGCGCCACCGCCCGTCGTCGTCAGCTCGCGGTGGAACCCTACGCCGGAGCAGTTGAGAGTGCTGGAAGAATTGTATCGGCGGGGGACTCGAACTCCCTCCGCCGATCAAATTCAACATATCACTGCTCAGCTTCGTCGGTATGGTAAGATTGAAGGTAAGAATGTGTTCTATTGGTTTCAGAATCATAAAGCTAGAGAACGCCAGAAACGACGTCGTCAGATGGAATCCGCCATCACCGCCGACCACTCCGCTCGTGAACCCGGAATCCTTGAAAGGAAAGATTCAGGGTCGGGTAGGACAGTGTATGAAGAACAGACCAAAAACTGGGCACCCTCTTCCAACTGCACAACACTTCCGGAGGAATCTGCTCCAATTCAACCACCGTCAAGCCCTTGCACCACATAA 624 52.72 MWMMGYNDAGDLNFPADSFTPRRLRPLLPRPLSSLSSTAAVNPPFNLIHTNDFFSQFHHMATVTDQTKRELNNAPPPVVVSSRWNPTPEQLRVLEELYRRGTRTPSADQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKRRRQMESAITADHSAREPGILERKDSGSGRTVYEEQTKNWAPSSNCTTLPEESAPIQPPSSPCTT 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7684742 7687440 + CmaCh13G009930.1 Cma13g00993 306820

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00993 207 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 54 164 IPR044555 GO:0003700|GO:0099402
Cma13g00993 207 MobiDBLite consensus disorder prediction 139 207 - -
Cma13g00993 207 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 54 164 - -
Cma13g00993 207 MobiDBLite consensus disorder prediction 174 196 - -
Cma13g00993 207 SUPERFAMILY Homeodomain-like 81 148 IPR009057 -
Cma13g00993 207 MobiDBLite consensus disorder prediction 143 173 - -
Cma13g00993 207 Pfam Homeodomain 82 141 IPR001356 GO:0003677
Cma13g00993 207 CDD homeodomain 83 143 IPR001356 GO:0003677
Cma13g00993 207 Gene3D - 81 148 - -
Cma13g00993 207 SMART HOX_1 79 146 IPR001356 GO:0003677
Cma13g00993 207 ProSiteProfiles 'Homeobox' domain profile. 87 142 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00993 - - - cpep:111783016 382.489
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g00311 Cma13g00993 CCT
Cma11g00311 Cma13g00993 ECH
Cma13g00993 Cma18g00071 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00592 Cma-Chr1:3110404 Cma13g00993 Cma-Chr13:7684742 1.99E-29 dispersed
Cma03g00690 Cma-Chr3:5694438 Cma13g00993 Cma-Chr13:7684742 1.82E-28 dispersed
Cma05g00171 Cma-Chr5:722174 Cma13g00993 Cma-Chr13:7684742 2.38E-30 dispersed
Cma12g00562 Cma-Chr12:2933794 Cma13g00993 Cma-Chr13:7684742 7.94E-30 dispersed
Cma13g00993 Cma-Chr13:7684742 Cma15g00124 Cma-Chr15:578806 2.18E-30 dispersed
Cma14g00454 Cma-Chr14:2171571 Cma13g00993 Cma-Chr13:7684742 1.20E-16 dispersed
Cma20g00448 Cma-Chr20:2126538 Cma13g00993 Cma-Chr13:7684742 5.52E-31 transposed
Cma11g00311 Cma-Chr11:1543460 Cma13g00993 Cma-Chr13:7684742 4.20E-48 wgd
Cma13g00993 Cma-Chr13:7684742 Cma18g00071 Cma-Chr18:303833 1.59E-96 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g212 . . . Bda15g00511 Bpe12g00698 . . . Cmo13g01029 Cmo18g00054 . Cma11g00311 . Car11g00287 Sed12g2115 Cpe20g00149 Cpe04g01371 Bhi02g00135 Tan09g1827 Cmetu02g0991 . Hepe09g0388 . . Cla06g01422 Cam06g1576 Cec06g1636 Cco06g1628 Clacu06g1538 Cmu06g1492 Cre06g2301 Cone2ag0760 . . . Lsi02g00230 Csa01g00712 Chy12g01399 Cme12g01833 Blo13g00175 . . . . . . Bma08g00054 Sed08g2754 . Cmo11g00316 Cma13g00993 Cma18g00071 Car13g00827 Car18g00062 Cpe09g01115 . Bhi08g01290 Tan05g2195 Cmetu12g1142 Lac10g0287 Hepe07g2356 . . Cla04g01050 Cam04g1093 Cec01g1608 Cco01g1654 Clacu04g1119 Cmu04g1103 Cre01g1402 Lsi06g01287 Csa01g00431 Chy02g02313 Cme02g01686
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma18g00071 CCT,CST,ECH 1 174 Wox Gene Family AT3G18010 58.0 4.1e-48 189.5
Cma13g00993 CCT,CST,ECH 1 194 Wox Gene Family AT3G18010 57.0 1.3e-46 184.5
Cma11g00311 CCT,ECH 1 165 Wox Gene Family AT3G18010 56.0 2.2e-41 167.2
Cma06g00070 . 4 234 Wox Gene Family AT3G03660 51.9 7.5e-51 198.4
Cma14g00454 . 14 246 Wox Gene Family AT3G03660 50.6 2.8e-42 169.9
Cma16g01272 . 136 409 Wox Gene Family AT4G35550 52.2 1.2e-71 267.3
Cma06g00150 . 28 265 Wox Gene Family AT4G35550 53.7 1.3e-65 247.3
Cma09g00047 CST 1 191 Wox Gene Family AT4G35550 60.7 5.3e-56 215.3
Cma01g02023 CST 40 181 Wox Gene Family AT4G35550 71.3 8.0e-52 201.4
Cma06g00150 . 28 167 Wox Gene Family AT1G20700 56.6 2.0e-39 159.8
Cma01g02023 CST 57 188 Wox Gene Family AT1G20700 58.5 5.8e-39 158.3
Cma05g00171 CST 10 181 Wox Gene Family AT1G46480 58.9 4.2e-47 185.3
Cma12g00562 CST 5 138 Wox Gene Family AT1G46480 62.8 2.8e-43 172.6
Cma07g00209 CST 1 387 Wox Gene Family AT2G33880 50.1 1.0e-63 241.5
Cma18g00071 CCT,CST,ECH 1 174 Wox Gene Family AT3G18010 58.0 4.1e-48 189.5
Cma13g00993 CCT,CST,ECH 1 194 Wox Gene Family AT3G18010 57.0 1.3e-46 184.5
Cma11g00311 CCT,ECH 1 165 Wox Gene Family AT3G18010 56.0 2.2e-41 167.2
Cma05g00171 CST 10 181 Wox Gene Family AT1G46480 58.9 4.2e-47 185.3
Cma12g00562 CST 5 138 Wox Gene Family AT1G46480 62.8 2.8e-43 172.6
Cma07g00209 CST 1 387 Wox Gene Family AT2G33880 50.1 1.0e-63 241.5
Cma06g00070 . 4 234 Wox Gene Family AT3G03660 51.9 7.5e-51 198.4
Cma14g00454 . 14 246 Wox Gene Family AT3G03660 50.6 2.8e-42 169.9
Cma16g01272 . 136 409 Wox Gene Family AT4G35550 52.2 1.2e-71 267.3
Cma06g00150 . 28 265 Wox Gene Family AT4G35550 53.7 1.3e-65 247.3
Cma09g00047 CST 1 191 Wox Gene Family AT4G35550 60.7 5.3e-56 215.3
Cma01g02023 CST 40 181 Wox Gene Family AT4G35550 71.3 8.0e-52 201.4
Cma06g00150 . 28 167 Wox Gene Family AT1G20700 56.6 2.0e-39 159.8
Cma01g02023 CST 57 188 Wox Gene Family AT1G20700 58.5 5.8e-39 158.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004252 3 1 2 3 2 1 2 1 1 1 1 1 3 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36137 PF00046 Homeodomain 5.40E-20 CL0123 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g00993 Cma_Chr13 FPKM 0.0 0.0 0.0 0.0 1.937628 1.257439 1.129977 11.291307 12.5944 9.954919