Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00993 ATGTGGATGATGGGTTACAATGACGCCGGAGATTTGAACTTCCCCGCCGATTCCTTCACTCCTCGCCGCCTTAGGCCTCTCCTTCCTCGCCCTCTCTCTTCTCTTTCCTCCACCGCCGCCGTTAATCCTCCTTTCAACCTTATCCACACCAACGATTTCTTCTCCCAATTTCACCACATGGCCACCGTGACTGATCAGACCAAGAGAGAGTTGAACAACGCGCCACCGCCCGTCGTCGTCAGCTCGCGGTGGAACCCTACGCCGGAGCAGTTGAGAGTGCTGGAAGAATTGTATCGGCGGGGGACTCGAACTCCCTCCGCCGATCAAATTCAACATATCACTGCTCAGCTTCGTCGGTATGGTAAGATTGAAGGTAAGAATGTGTTCTATTGGTTTCAGAATCATAAAGCTAGAGAACGCCAGAAACGACGTCGTCAGATGGAATCCGCCATCACCGCCGACCACTCCGCTCGTGAACCCGGAATCCTTGAAAGGAAAGATTCAGGGTCGGGTAGGACAGTGTATGAAGAACAGACCAAAAACTGGGCACCCTCTTCCAACTGCACAACACTTCCGGAGGAATCTGCTCCAATTCAACCACCGTCAAGCCCTTGCACCACATAA 624 52.72 MWMMGYNDAGDLNFPADSFTPRRLRPLLPRPLSSLSSTAAVNPPFNLIHTNDFFSQFHHMATVTDQTKRELNNAPPPVVVSSRWNPTPEQLRVLEELYRRGTRTPSADQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKRRRQMESAITADHSAREPGILERKDSGSGRTVYEEQTKNWAPSSNCTTLPEESAPIQPPSSPCTT 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7684742 7687440 + CmaCh13G009930.1 Cma13g00993 306820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00993 207 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 54 164 IPR044555 GO:0003700|GO:0099402
Cma13g00993 207 MobiDBLite consensus disorder prediction 139 207 - -
Cma13g00993 207 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 54 164 - -
Cma13g00993 207 MobiDBLite consensus disorder prediction 174 196 - -
Cma13g00993 207 SUPERFAMILY Homeodomain-like 81 148 IPR009057 -
Cma13g00993 207 MobiDBLite consensus disorder prediction 143 173 - -
Cma13g00993 207 Pfam Homeodomain 82 141 IPR001356 GO:0003677
Cma13g00993 207 CDD homeodomain 83 143 IPR001356 GO:0003677
Cma13g00993 207 Gene3D - 81 148 - -
Cma13g00993 207 SMART HOX_1 79 146 IPR001356 GO:0003677
Cma13g00993 207 ProSiteProfiles 'Homeobox' domain profile. 87 142 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g00311 Cma13g00993 CCT
Cma11g00311 Cma13g00993 ECH
Cma13g00993 Cma18g00071 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00592 Cma-Chr1:3110404 Cma13g00993 Cma-Chr13:7684742 1.99E-29 dispersed
Cma03g00690 Cma-Chr3:5694438 Cma13g00993 Cma-Chr13:7684742 1.82E-28 dispersed
Cma05g00171 Cma-Chr5:722174 Cma13g00993 Cma-Chr13:7684742 2.38E-30 dispersed
Cma12g00562 Cma-Chr12:2933794 Cma13g00993 Cma-Chr13:7684742 7.94E-30 dispersed
Cma13g00993 Cma-Chr13:7684742 Cma15g00124 Cma-Chr15:578806 2.18E-30 dispersed
Cma14g00454 Cma-Chr14:2171571 Cma13g00993 Cma-Chr13:7684742 1.20E-16 dispersed
Cma20g00448 Cma-Chr20:2126538 Cma13g00993 Cma-Chr13:7684742 5.52E-31 transposed
Cma11g00311 Cma-Chr11:1543460 Cma13g00993 Cma-Chr13:7684742 4.20E-48 wgd
Cma13g00993 Cma-Chr13:7684742 Cma18g00071 Cma-Chr18:303833 1.59E-96 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36137 PF00046 Homeodomain 5.40E-20 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00993 - - cpep:111783016 382.489