Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00995 ATGATGGTTTATCTGAGATCTCTTGTGGTTCTCACTCTCTACACTCTCTTGACTTCCCACAATTCAGTTTTCGTCTCTGCAACTACAATAACATTCTACAACAAATGCCCTCATCCAGTTTGGCCTGGCATTCAGCCCAGTGCTGGCAAGCCCTTGTTGGCTCGCGGAGGCTTCAAGCTACCACCCAACAAGGGCTACTCTCTACGCCTTCCAGCCCTGTGGTCTGGCCGTTTCTGGGGCCGCCATGGCTGTGCTTTTGACGCATCTGGTAGAGGCAAGTGCGCTACAGGGGATTGTGGTGGTGCCCTCTACTGCAATGGCATTGGAGGTGCCCCACCAGCCACTCTTGCTGAGATTACACTTGGAAATGACCAAGATTTCTATGATGTGAGCCTTGTTGATGGCTACAATCTGGCTATGTCCATTACCCCGTCTAAAGGCTCGGGGAAATGTAGCTATGCTGGGTGTGTGAGTGACCTTAACATGATGTGTCCTGTGGGTTTACAAGTTAGATCTCACGATGACCACAGAGTGGTGGCCTGCAAAAGTGCTTGCTCTGCATTCAATTCTCCAAGGTATTGCTGCACAGGCAGGTTTGGCAATCCGCAGTCCTGCAAGCCAACCGCATATTCCAAGATCTTCAAGACCGCTTGTCCCAAGGCTTACTCTTATGCTTATGATGATCCCACTAGCATTGCAACTTGCACTGGTGGCAACTATTTGGTTACTTTTTGCCCTCATCACAGTTAG 750 49.87 MMVYLRSLVVLTLYTLLTSHNSVFVSATTITFYNKCPHPVWPGIQPSAGKPLLARGGFKLPPNKGYSLRLPALWSGRFWGRHGCAFDASGRGKCATGDCGGALYCNGIGGAPPATLAEITLGNDQDFYDVSLVDGYNLAMSITPSKGSGKCSYAGCVSDLNMMCPVGLQVRSHDDHRVVACKSACSAFNSPRYCCTGRFGNPQSCKPTAYSKIFKTACPKAYSYAYDDPTSIATCTGGNYLVTFCPHHS 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7691437 7693386 + CmaCh13G009950.1 Cma13g00995 306822

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00995 249 ProSiteProfiles Thaumatin family profile. 27 248 IPR001938 -
Cma13g00995 249 ProSitePatterns Thaumatin family signature. 90 105 IPR017949 -
Cma13g00995 249 PIRSF PR5 1 249 IPR001938 -
Cma13g00995 249 Gene3D Thaumatin 28 246 IPR037176 -
Cma13g00995 249 PANTHER THAUMATIN-LIKE PROTEIN 8 248 - -
Cma13g00995 249 PANTHER OS03G0233200 PROTEIN 8 248 IPR001938 -
Cma13g00995 249 PRINTS Pathogenesis-related protein signature 29 41 IPR001938 -
Cma13g00995 249 PRINTS Pathogenesis-related protein signature 77 88 IPR001938 -
Cma13g00995 249 PRINTS Pathogenesis-related protein signature 90 119 IPR001938 -
Cma13g00995 249 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Cma13g00995 249 PRINTS Pathogenesis-related protein signature 236 245 IPR001938 -
Cma13g00995 249 SUPERFAMILY Osmotin, thaumatin-like protein 28 247 IPR037176 -
Cma13g00995 249 Pfam Thaumatin family 34 246 IPR001938 -
Cma13g00995 249 SMART tha2 30 246 IPR001938 -
Cma13g00995 249 CDD TLP-PA 29 245 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00995 - - - csv:101219392 489.96
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma13g00995 Cma18g00070 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00590 Cma-Chr1:3099919 Cma13g00995 Cma-Chr13:7691437 2.64E-65 dispersed
Cma13g00135 Cma-Chr13:940882 Cma13g00995 Cma-Chr13:7691437 1.45E-63 dispersed
Cma13g00995 Cma-Chr13:7691437 Cma17g00941 Cma-Chr17:7038348 9.61E-96 dispersed
Cma11g01047 Cma-Chr11:5758761 Cma13g00995 Cma-Chr13:7691437 4.12E-70 transposed
Cma13g00995 Cma-Chr13:7691437 Cma18g00070 Cma-Chr18:297974 2.40E-169 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g213 Blo04g00849 Blo16g00113 . . . Bpe13g00376 . . Cmo13g01030 Cmo18g00053 . . . . . Cpe20g00148 . . . . . . . . . . . . . . . . . . . Lsi02g00229 Csa01g00710 Chy12g01400 Cme12g01834 . . Bda11g01787 . . . Bma03g00919 . Sed08g1361 . . Cma13g00995 Cma18g00070 Car13g00828 Car18g00061 Cpe09g01116 . Bhi08g01289 Tan05g2196 Cmetu04g1577 Lac10g0286 Hepe07g2357 . . Cla04g01051 Cam04g1094 Cec01g1609 Cco01g1655 Clacu04g1120 Cmu04g1104 Cre01g1403 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001931 3 2 2 2 1 2 2 2 2 3 2 2 4 2 2 4 2 0 4 2 2 2 2 2 2 2 2 3 2 3 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g00995 Cma_Chr13 FPKM 32.453217 34.784279 2.014825 2.090838 63.686489 63.627186 63.678051 0.154031 0.130918 0.137932