Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00996 ATGCGTGCTTCACAGAATTACAATTCTCTTAGCTATGATGACAAGATCTTGGATGGCTTTTATGACCTATATGGAGTCTTCACCGAGTCCACCTCAGAAAAAATGCCTTCCCTAGTTGATTTGCAAGGAGCACCAATGTCTGGCAATGTCACTTGGGAAGCAGTTCTGATCAACAAAGCTGCTGATGCTAACTTATTGAAACTTGAACAGACAGCATTGGAGATGGCCATCAAGATGGGGTCAGAATCTCCAATTTCTTTAAATAGTTATTTGGTGCGGAAGCTTGCTGTTTTAGTTTCAGATCATATGGGGGGACCAGTGGGGGATCCTGAAAAGATGTTGATAAAATGGAGAAATCTTAGTTACAGCTTGAAAGCAACCCTTGGCAGTATGGTTTTGCCTCTTGGCTCCCTTACTGTAGGGTTGGCCCGTCATCGTGCATTGTTATTCAAGCTTTTGGCAGATGGCGTGGGCATTCCTTGTCGGTTGGTAAAAGGACCACAGTACACGGGTTCTGATGATGTGGCAATGAACTTCGTAAAGATTGATGATGGAAGGGAGTACATTGTCGATTTAATGGCAGATCCTGGTGCACTTATTCCAGCTGATGTTGCTGGATCGCATGTAGAGTATGATGGATCCCCTTTTTCAGCCAGTCCACTTTCTAGAGATGTTGATTCCTCTCAGGCAGCATCTTCAAGCAGTGGGGTTGGCAGTTCATTAGAGGAAAATCCATATTTTGGGATATCGGATAGGAAACCAAAGTCCGGGACTCTCAGTGCCACAAAGGAATATGATCCTCCCAATGTCAACAAGGGGCCGTCACGTGATTTTGCTAGCAAACCAAATTATCCTGGCATGCACATTCGATCACCTTCATGGACCGAGGGTGTTAGTTCACCTGCAGTGCGCAGAATGAAAGTAAAGGATGTTTCACAATACATGATTGATGCTGCCAAAGAGAATCCACGTTTGGCTCAGAAGCTTCATGACGTGTTGCTTGAAAGTGGTGTAGTTGCTCCCCCTAACTTGTTTACCGAGGCATACCCCGACCAAATAGATGTTATCGTTGAGTCTAAGTCACCAACTGAAGACAAGGATCAAAGTAGGAAGGTGCCTGGTCTCTGTGAAAGTGTAGATAAGAAAGATCCTCGTCCAACTAACTTTTTGCCGCCCTTGCCTCAGCCCAGACAGCACTCTAAAGCAAGCCCTACCCATGGTCAACAACTGCACCATAAACCTCTGGAACTAAACCTCTCTCTTGATTCAAGAGAATCATCTGGACAACCTATAGCCTTACCGTTTGAGGTAACTCCAGTGAAGTATGGGAGAAATGTGCCTGTCGCTGCAGCAGCAGCAGCTGCTGCAGCTGTTGTTGCATCATCAATGGTGGTAGCTGCAGCAAAGAATACCGATGCAAATCTCGAAATTCCTGTAGCAGCTGCTGCCACAGCCACTGCTGCTGCAGTGGTTGCAACAACGGCGGCTGTCAACAAGCAATATGAGCAGGTTGAGGCCGATGCTGCTCTTTATGAGCAACGTGGAAGTGGAGATAGGGAGCATGAAGCTTGTGGAGAAAATTCAGAGGGTGAACGGATATCAGATAGATCGGTAGGAAACGATAGCACAAAATCCGATATTACCCTTGATGATGTTGCAGAATGTGAAATCCCATGGGAAGAAATTTCCTTGGGCGAGCGTATTGGACTTGGATCATATGGGGAGGTCTACCGTGGAGATTGGCATGGAACTGAGGTAGCAGTGAAGAGATTTCTAGACCAGGATATTTCTGGCGAAACTCTTGAAGAATTCAAAAGTGAGGTTCGAATTATGAAAAGACTTCGGCATCCAAACGTTGTTCTCTTCATGGGAGCTGTGACTCGTGCTCCCCATCTTTCAATTGTTACCGAATTTCTTCCCAGAGGTAGCTTGTACAGGTTACTTCACCGTCCCAACAATCAATTAGACGAACGAAAGCGAATGAGGATGGCCCTTGATGCAGCTCGGGGAATGAATTATTTGCACAATTGCACGCCTGTCGTTGTACACCGTGATTTGAAGTCCCCAAATCTACTCGTCGATAAAAATTGGGTCGTTAAGGTGTGTGATTTTGGTTTATCAAAAATGAAGCATAGCACATTTCTTTCTTCAAGGTCAACAGCAGGAACCGCCGAGTGGATGGCTCCAGAAGTGCTGAGAAATGAACCTTCAGACGAAAAGTGCGATGTTTATAGTTACGGAGTCATACTTTGGGAGCTGTCTACGATGCAACAACCGTGGGGAGGAATGAACCCAATGCAAGTTGTTGGCGCCGTTGGCTTTCAGCATCGCCGTCTTGACATCCCAGACAATATGGATCCTGCTATCGCCGACATTATTAGGAAATGCTGGCAAACCTTGAAGTCTCATGCTTCTAATGCTAATTGCATTCTAGTGCGATCAGGATCTGATGAGGCACATTTGGAAGGGTTTGCTGAGGTATTAGACATCATTTTGGATCAACCCTCGTTACAGCTTAACAGCTCCAAGAACACAAAGTTTATATGTGATTGCTTGTACTTTGATCCAAGGTTAAGACCTTCATTTGCGGAGATTATGGCTGCGCTAAAGCCGCTGCAGAAGCCAATGTCGAGTTCTCAAGTGCCGAGACCAAGTGGTCGTGATAAGGCTCGATTATTGCAAGTTGCGGAAGACCCCTGCTATCTGCTTGTGATCATGGCTTCTTTTTTCGGATCAAATACATTTCTATCCCATCCACTTGCCAGAACTTATCACTTAGCTTCCTCACAAACACCTTCACCTTCAACCCCACCTTCCCAACCGCCGCAAACTCCGTCGCCATCTCCATCTCTGAGCACTACTTCATCGGAGCCACTAAAACCAGCCCCAACAAAGGTGGAGCAACAGAGACCCACCACCAATGTCGAGTCCACGGATTGGATTGCTTCAACCTTGACAAGGCGATTCGGGCTCGGCGCAGGCCTTGCGTGGGCTGCTTTTCTCGCCTTTGGTGTAATCTCCGAACAGATCAAAACCCGCCTCGAAGTCTCTCAAGAAGTAGCAAATACAAGAAACGTTGAAAAGGAAGAGGAAGTAGTGCTACCCAATGGCATAAGGTATTACGAGCTGAGAGTTGGCGGCGGCGCCACACCGAGGTCCGGGGACTTGGTTGTGATTAAGCTCAAGGGAAAGATACAAGGCAGTGATGAAGTATTTGTAGATACCTTTGAAAGTGGTAGAAAGCCACTGGCTTTGGTGATGGGCTCAAGACCTTACAGCAGAGGAATGTGTGAAGGTTTGGAATATGTGGTGAAATCCATGAAAGCAGGTGATAAGAATCTTAATGAACGGGAGAAACTGAAATCCAGAGCGCTTCGTCGTCGACAGCTTCATGGGCACTGTGATCGACTCCCATTTCTTGGCCCTCACTGCCACTGTCACTGTAAGATTTACGACTTCTCTGATTGGACTGAAGAATTTGATTCAGAATTGCATAGTAAGAAAGAATTTGGTCGGTTAGGTAGCACAAATTTTGTGATACTTGCTGTTTTGACTCTAGTGCTTAAAGGCACTTGGCATTTTAGACAGGTAATGCTGTTTGATTCTGTAATTCTGTCTGTGCTTGTAGTGACATGGGGCCTTCGTCTTGGTTTTTTCTTGTTAATGAGGATTTTGCAATGGGGAGAGGATCGACGTTTTGATAAAATGCGTAGTAATTTGGGAAAATTAGCAGTTTTCTGGATATTGCAGGCTGTCTGGATCTGGACCGTAAGTTTACCTATCACGGTGGTCAATGCAAGCAATCACAATCCATCTCTCCGAGCTGCGGATGTAATTGGGTGGATTATATGGTTAGTGGGTGTTGTAATCGAAACTACAGCTGATCAACAAAAATTGGCATTTAAAAACTCTCCAGAAAATAGGGGGAAGTGGTGCGATGTTGGACTTTGGAAGGTCTCTCGTCATCCTAATTACTTTGGTGAGATCTTTCTTTGGTGGGGAATCTTCGTTGCTTCCACTCCCGTTCTGGAAGGTATTGAGTGGCTTGTGATACTTGGGCCAATATTCTTAACATTGCTGCTTCTTTTTGTCAGTGGGATCCCACTACTTGAGAAATCAGCAGATAAGAAGTTTGGGAATGTGACCGAATACGTACGTTATAAAAGAGAGACTAGGATGATAACTCTTGAAATGGCACAAGCTAATTCTATCTATTGCCTGAAGTTTCTTACCATTTGTGCAAGGAATATTGATATTCCCACTTTATGCAGGAATGCTTGCAATCCTCATCATCTTGACTCGTCAGTGGTCATGTGA 4317 45.33 MRASQNYNSLSYDDKILDGFYDLYGVFTESTSEKMPSLVDLQGAPMSGNVTWEAVLINKAADANLLKLEQTALEMAIKMGSESPISLNSYLVRKLAVLVSDHMGGPVGDPEKMLIKWRNLSYSLKATLGSMVLPLGSLTVGLARHRALLFKLLADGVGIPCRLVKGPQYTGSDDVAMNFVKIDDGREYIVDLMADPGALIPADVAGSHVEYDGSPFSASPLSRDVDSSQAASSSSGVGSSLEENPYFGISDRKPKSGTLSATKEYDPPNVNKGPSRDFASKPNYPGMHIRSPSWTEGVSSPAVRRMKVKDVSQYMIDAAKENPRLAQKLHDVLLESGVVAPPNLFTEAYPDQIDVIVESKSPTEDKDQSRKVPGLCESVDKKDPRPTNFLPPLPQPRQHSKASPTHGQQLHHKPLELNLSLDSRESSGQPIALPFEVTPVKYGRNVPVAAAAAAAAAVVASSMVVAAAKNTDANLEIPVAAAATATAAAVVATTAAVNKQYEQVEADAALYEQRGSGDREHEACGENSEGERISDRSVGNDSTKSDITLDDVAECEIPWEEISLGERIGLGSYGEVYRGDWHGTEVAVKRFLDQDISGETLEEFKSEVRIMKRLRHPNVVLFMGAVTRAPHLSIVTEFLPRGSLYRLLHRPNNQLDERKRMRMALDAARGMNYLHNCTPVVVHRDLKSPNLLVDKNWVVKVCDFGLSKMKHSTFLSSRSTAGTAEWMAPEVLRNEPSDEKCDVYSYGVILWELSTMQQPWGGMNPMQVVGAVGFQHRRLDIPDNMDPAIADIIRKCWQTLKSHASNANCILVRSGSDEAHLEGFAEVLDIILDQPSLQLNSSKNTKFICDCLYFDPRLRPSFAEIMAALKPLQKPMSSSQVPRPSGRDKARLLQVAEDPCYLLVIMASFFGSNTFLSHPLARTYHLASSQTPSPSTPPSQPPQTPSPSPSLSTTSSEPLKPAPTKVEQQRPTTNVESTDWIASTLTRRFGLGAGLAWAAFLAFGVISEQIKTRLEVSQEVANTRNVEKEEEVVLPNGIRYYELRVGGGATPRSGDLVVIKLKGKIQGSDEVFVDTFESGRKPLALVMGSRPYSRGMCEGLEYVVKSMKAGDKNLNEREKLKSRALRRRQLHGHCDRLPFLGPHCHCHCKIYDFSDWTEEFDSELHSKKEFGRLGSTNFVILAVLTLVLKGTWHFRQVMLFDSVILSVLVVTWGLRLGFFLLMRILQWGEDRRFDKMRSNLGKLAVFWILQAVWIWTVSLPITVVNASNHNPSLRAADVIGWIIWLVGVVIETTADQQKLAFKNSPENRGKWCDVGLWKVSRHPNYFGEIFLWWGIFVASTPVLEGIEWLVILGPIFLTLLLLFVSGIPLLEKSADKKFGNVTEYVRYKRETRMITLEMAQANSIYCLKFLTICARNIDIPTLCRNACNPHHLDSSVVM 1438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7694080 7707917 - CmaCh13G009960.1 Cma13g00996 306823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00996 1438 ProSiteProfiles Protein kinase domain profile. 562 873 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00996 1438 ProSitePatterns Serine/Threonine protein kinases active-site signature. 681 693 IPR008271 GO:0004672|GO:0006468
Cma13g00996 1438 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 1054 1112 IPR001179 GO:0003755
Cma13g00996 1438 Gene3D - 1014 1114 IPR046357 GO:0003755
Cma13g00996 1438 SUPERFAMILY ssDNA viruses 940 1108 IPR016184 -
Cma13g00996 1438 MobiDBLite consensus disorder prediction 949 977 - -
Cma13g00996 1438 MobiDBLite consensus disorder prediction 360 409 - -
Cma13g00996 1438 MobiDBLite consensus disorder prediction 927 977 - -
Cma13g00996 1438 MobiDBLite consensus disorder prediction 218 296 - -
Cma13g00996 1438 MobiDBLite consensus disorder prediction 934 948 - -
Cma13g00996 1438 Gene3D - 1197 1395 - -
Cma13g00996 1438 Pfam Protein of unknown function (DUF1295) 1171 1391 IPR010721 -
Cma13g00996 1438 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 1050 1112 IPR001179 GO:0003755
Cma13g00996 1438 MobiDBLite consensus disorder prediction 220 241 - -
Cma13g00996 1438 MobiDBLite consensus disorder prediction 513 545 - -
Cma13g00996 1438 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 848 899 - -
Cma13g00996 1438 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 6 799 - -
Cma13g00996 1438 Pfam Ethylene-responsive protein kinase Le-CTR1 6 200 - -
Cma13g00996 1438 Gene3D Transferase(Phosphotransferase) domain 1 641 816 - -
Cma13g00996 1438 CDD STKc_MAP3K-like 568 799 - -
Cma13g00996 1438 Pfam Protein tyrosine and serine/threonine kinase 563 802 IPR001245 GO:0004672|GO:0006468
Cma13g00996 1438 MobiDBLite consensus disorder prediction 513 539 - -
Cma13g00996 1438 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 848 899 - -
Cma13g00996 1438 SUPERFAMILY Protein kinase-like (PK-like) 544 799 IPR011009 -
Cma13g00996 1438 MobiDBLite consensus disorder prediction 360 384 - -
Cma13g00996 1438 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 6 799 - -
Cma13g00996 1438 ProSiteProfiles Steroid 5-alpha reductase C-terminal domain profile. 1280 1348 IPR001104 GO:0006629|GO:0016627
Cma13g00996 1438 SMART serkin_6 562 872 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00996 1438 Coils Coil 494 514 - -
Cma13g00996 1438 ProSitePatterns Protein kinases ATP-binding region signature. 568 589 IPR017441 GO:0005524
Cma13g00996 1438 Gene3D Phosphorylase Kinase; domain 1 555 639 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma13g00996 Cma18g00069 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00994 Cma-Chr11:5353144 Cma13g00996 Cma-Chr13:7694080 5.51E-46 dispersed
Cma13g00996 Cma-Chr13:7694080 Cma09g00596 Cma-Chr9:2765119 8.22E-29 dispersed
Cma06g00932 Cma-Chr6:6302208 Cma13g00996 Cma-Chr13:7694080 2.01E-10 transposed
Cma18g00068 Cma-Chr18:290057 Cma13g00996 Cma-Chr13:7694080 1.21E-72 transposed
Cma18g00069 Cma-Chr18:292522 Cma13g00996 Cma-Chr13:7694080 7.39E-135 transposed
Cma13g00996 Cma-Chr13:7694080 Cma18g00067 Cma-Chr18:280844 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69029 PF07714 PK_Tyr_Ser-Thr 2.50E-62 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00996 - - csv:101209024 1478.77