Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00998 ATGGATGGCTTTCTGAAGAAGCGGGGAACCGAGGAAGGCGACCGCTGGTTTTGTACGGATGATAAGCAATCAGACTTTTTCACAGAGTATGGCGAAGCAAGTCGATACCAAATTCAAGAAGTTGTTGGGAAAGGAAGCTACGGAGTTGTTGGTTCTGCAATTGATAGCCAGACGGGTGAGAGAGTTGCCATCAAGAAAATTAATGATGTTTTTGAGCATGTATCTGATGCCATACGCATCCTCAGAGAAATTAAGCTTCTTCGGATGCTTCATCATCCGAATATTGTAGAGATAAAACATATTATGCTTCCTCCATCACAACGAGAATTCAAAGATATATATCTCGTTTTTGAGTTGATGAAGTCTGATCTTCACCATGTAATTAAGGCAAATAATGATCTTTCTCCCAAGCAGCATAAATACTTTTTGTACCAGCTTCTTAGTGGCCTAAAATATATACATGCAGCAAATGTCCTTCATCGAGATTTGAAGCCGAAAAACATACTTGCTAATGCTGACTGCAAATTGAAGATATGTGATTTTGGACTTGCTCGTGTATCTTTTAGTGATGCGCCATCTACTATTTTCTGGACAGATTATGTTGCAACTCGTTGGTATCGTGCTCCCGAACTCTGTGGATCATTTTTCTCGAGATATACCCCTGCTATAGATATATGGAGTATCGGATGTATATTTGCAGAAATTCTTACGGGAAAACCCTTGTTTCCTGGAAAAAATGTGGTGCACCAATTAGACCTAATTACCGATCTGTTTGGCACTCCTGAAGCTGAGGCCATAGCGAAGATTCGGAATGAGAAGGCAAGGAGGTATCTAGGAAACATGCGTAAAAAACCACCAGTTCCATTCTCACGAAAGTTTCCCAATGTTGACCCATCGGCACTTCGTTTACTGGAACGTCTTCTGGCATTTGATCCCAAATGCCGTCCAACAGCTGCAGAGGCACTTTCTGATCCTTACTTCAATGGTGTTGCGAAAACGGAACTTGAACCTTCTATTCAACCAATTTCAAAAATAGAGTTCGAGTTTGAGAGGAGGAGATTATCAAAAGATGATATTAGAGAGTTAATTTATGCAGAGATTTTAGAGTATCATCCCCAAATGCGTGAGGAGTGTCTACACCCTGAAGATCAAACTACCTTTTTGTATCCAAGTGGCGTTGATCGATTTAGGCTTCAGTTTGCGCATCTGGAAGAGCACCATGTTAATGGTGAAAGAAGACTTCCACTTCAAAGGCAGAACATTTCTTTACCTCGCGAGCGGGTTAGTCCAACTGAGAACAACAACGATGCACATGACATTGATTTTCAAAGCAGGGGGGAAGACAAGAGTGCTCATCTCTTCAAAAGTGCTAGCATTAGTGCATCGAGGTGTGTTGGGGTATTACCGAAGGAAAAGTCTGAGGCGGAAGAAACGAGTTCTGAAGTGAAAAATGAAGGAGTGGATGGGCTGTCTCAAAAGATTGCAGTCCTTCAGACTTAA 1500 41.67 MDGFLKKRGTEEGDRWFCTDDKQSDFFTEYGEASRYQIQEVVGKGSYGVVGSAIDSQTGERVAIKKINDVFEHVSDAIRILREIKLLRMLHHPNIVEIKHIMLPPSQREFKDIYLVFELMKSDLHHVIKANNDLSPKQHKYFLYQLLSGLKYIHAANVLHRDLKPKNILANADCKLKICDFGLARVSFSDAPSTIFWTDYVATRWYRAPELCGSFFSRYTPAIDIWSIGCIFAEILTGKPLFPGKNVVHQLDLITDLFGTPEAEAIAKIRNEKARRYLGNMRKKPPVPFSRKFPNVDPSALRLLERLLAFDPKCRPTAAEALSDPYFNGVAKTELEPSIQPISKIEFEFERRRLSKDDIRELIYAEILEYHPQMREECLHPEDQTTFLYPSGVDRFRLQFAHLEEHHVNGERRLPLQRQNISLPRERVSPTENNNDAHDIDFQSRGEDKSAHLFKSASISASRCVGVLPKEKSEAEETSSEVKNEGVDGLSQKIAVLQT 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7716467 7720767 + CmaCh13G009980.1 Cma13g00998 306825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00998 499 SMART serkin_6 36 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00998 499 ProSitePatterns Protein kinases ATP-binding region signature. 42 66 IPR017441 GO:0005524
Cma13g00998 499 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 17 445 - -
Cma13g00998 499 Gene3D Phosphorylase Kinase; domain 1 52 373 - -
Cma13g00998 499 SUPERFAMILY Protein kinase-like (PK-like) 32 332 IPR011009 -
Cma13g00998 499 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 17 445 - -
Cma13g00998 499 CDD STKc_TDY_MAPK 35 372 - -
Cma13g00998 499 MobiDBLite consensus disorder prediction 469 483 - -
Cma13g00998 499 Pfam Protein kinase domain 36 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00998 499 ProSitePatterns MAP kinase signature. 71 174 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cma13g00998 499 ProSiteProfiles Protein kinase domain profile. 36 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00998 499 MobiDBLite consensus disorder prediction 469 499 - -
Cma13g00998 499 Gene3D Transferase(Phosphotransferase) domain 1 122 350 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g00304 Cma13g00998 CCT
Cma10g00324 Cma13g00998 CCT
Cma11g00304 Cma13g00998 ECH
Cma10g00324 Cma13g00998 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00998 Cma-Chr13:7716467 Cma17g00278 Cma-Chr17:1464912 0 dispersed
Cma10g00324 Cma-Chr10:1489796 Cma13g00998 Cma-Chr13:7716467 0 wgd
Cma11g00304 Cma-Chr11:1510304 Cma13g00998 Cma-Chr13:7716467 0 wgd
Cma13g00998 Cma-Chr13:7716467 Cma18g00063 Cma-Chr18:268209 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69030 PF00069 Pkinase 6.00E-68 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00998 - - bhj:120082540 865.914