Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01000 ATGGGCATAAAAGATCTCCTCAGATTCATGAAGCCCTACATCGAGCCCATTCACATCAAGAAATACGCGGGCAAACGTGTGGGTATCGATGCCTATTCGTGGCTGCACAAGGGAGGTAACGTTCTTGCTTCTTCCTTATTGCAACGTGCTATTTTCTTTGTGGGGGGGGGGGATGTTGTTATCCATTCATTGACACTGCCTTTTATACCAGCTTATTCGTGTAGTATGGAGATTTGCCTTAACTCTGATAGTGATAAGAAATGGCGATACTTAGACTACTGTATGCATAGAATCAATCTGCTTCGCCATTACAAGATAGTCCCAGTTGTTGTTTTTGATGGTGGGAATGTTCCATGTAAGAAAGCCACTGAGCAAGAGAGGCACAGAAGAAGAGAGGCAAACAGGGAATTAGCGATGGAGAAGTTGAAAGAAGGGAATGTTGGTGCTGCCTCTGAGCTTTTCCAGCGAGCGGTGAATATTACTCCCTTCATCGCAAACCAACTCATAAAGGCAAGTCTTCTTAGAGAACACAACATCGAATTTGTGGTTGCCCCTTATGAGGCTGATGCACAGTTGGCATATCTTTCCAGCCTCGGAACACAAAACGGAGGAATTGCGGCTGTGATTACAGAAGATAGTGACCTGATTGCATATGGTTGTAAAGCTACGATATTTAAGATGGACCGATACGGCAATGGGGAAGAGATGATTCTAGATAAGATTTTTGACTCGGCAGGCTGCACACCTTCCTTCAGATATTTTGATAAGGAATTGCTCACGGGTATGTGTGTCTTAGCTGGCTGTGATTTTCTTCCTTCTGTTCCTGGAATTGGCATTGCAAAGGCTTATGCCTTGGTCTCCAAGTATCGGAATTTGGAGCGTGTTCTTTCTGTTTTGAAGCTTGAGAAACCGAAGCAAATGCCTGAAGATTACTTCAAACTTTTCAGGGAAGCTATGGCAGTTTTTCAGCATGCACAAATATATGATGCTGAAACGAGAAAGCTTAAACATATGAAACCGCTTCCTCTAGAGCTTCTGCAGTTCCTAGACGAAGAAATTGATTTCTTGGGACCAGATATGCCTCCTTCAATAGCTGCTTCAATAGCCGAAGGAGGGTTAAACCCCATAACAATGGAGGCCTTTGACTATCTCCCAAGTGAAGAACGTCGCCAAGACCTTGTACAAATCAAGAACAACGAAAGACTTCCAAGGTTCGAGGCAGCTGAGGCCGCTGAGGCATCTGCGAAGGATAGCTGTTTTATGGTCTTCGTCTGTAAGGACAAAGAAAGACATATCCCGGATAAGAGAATTAAACCCCTAGTAGATGGCAGTAATTCTAAAGGAGAATTGGCACTTGAGAAGCTAAGCACACCGTTGAAAGTTCAAACAACAAATGAAGACAAAAACGTTCTTGCTTACAAATCATTAAAGATTCCTGACAACAATCCATTCAAGAGAAGGAAAGGTGATGAACTGCACATGGATCTAGCGCAGAGTGTTGACGAAGAAGCTCTAGTCATAAGTGAGGATGAGTGTGAGGAACCATCATGTGGGTCTCTAGATAATTTACTAAAATCTTCCAAGAAAAGAAAAATAAACGAAGCTCTCCCTGACCAAATGGATAATGTTTCTGAGCCTTTGTCGGGGTTGACCCAAGAAGAGGATTTGGTGCTGTTAGAACTGACACCAGAATCCCAAAAGAGCGTAAGCTCAAACTCGAGCAGTGTCATTGGTAGAAAAAGAGTTGTAGGCAAGGAGAACAAGAGAAAAAGTAGCTGTAATAGTTCAATAACTCCAAAGAACAGTATATTGAACTTTTTCCGTAGAGTATGA 1833 42.83 MGIKDLLRFMKPYIEPIHIKKYAGKRVGIDAYSWLHKGGNVLASSLLQRAIFFVGGGDVVIHSLTLPFIPAYSCSMEICLNSDSDKKWRYLDYCMHRINLLRHYKIVPVVVFDGGNVPCKKATEQERHRRREANRELAMEKLKEGNVGAASELFQRAVNITPFIANQLIKASLLREHNIEFVVAPYEADAQLAYLSSLGTQNGGIAAVITEDSDLIAYGCKATIFKMDRYGNGEEMILDKIFDSAGCTPSFRYFDKELLTGMCVLAGCDFLPSVPGIGIAKAYALVSKYRNLERVLSVLKLEKPKQMPEDYFKLFREAMAVFQHAQIYDAETRKLKHMKPLPLELLQFLDEEIDFLGPDMPPSIAASIAEGGLNPITMEAFDYLPSEERRQDLVQIKNNERLPRFEAAEAAEASAKDSCFMVFVCKDKERHIPDKRIKPLVDGSNSKGELALEKLSTPLKVQTTNEDKNVLAYKSLKIPDNNPFKRRKGDELHMDLAQSVDEEALVISEDECEEPSCGSLDNLLKSSKKRKINEALPDQMDNVSEPLSGLTQEEDLVLLELTPESQKSVSSNSSSVIGRKRVVGKENKRKSSCNSSITPKNSILNFFRRV 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7725033 7728896 - CmaCh13G010000.1 Cma13g01000 306827

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01000 610 Gene3D - 1 245 - -
Cma13g01000 610 SMART HhH_4 256 289 IPR008918 GO:0003677|GO:0003824
Cma13g01000 610 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 255 387 IPR036279 -
Cma13g01000 610 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Cma13g01000 610 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 108 127 IPR006084 -
Cma13g01000 610 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 174 191 IPR006084 -
Cma13g01000 610 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 259 274 IPR006084 -
Cma13g01000 610 MobiDBLite consensus disorder prediction 568 596 - -
Cma13g01000 610 PANTHER 5'-3' EXONUCLEASE FAMILY PROTEIN 1 39 - -
Cma13g01000 610 Gene3D - 252 325 - -
Cma13g01000 610 SMART xpgineu 175 247 IPR006086 GO:0004518
Cma13g01000 610 ProSitePatterns XPG protein signature 2. 178 192 IPR019974 GO:0016788
Cma13g01000 610 CDD H3TH_FEN1-like 257 329 - -
Cma13g01000 610 SUPERFAMILY PIN domain-like 2 269 IPR029060 -
Cma13g01000 610 SMART xpgn3 1 134 IPR006085 GO:0004518
Cma13g01000 610 Pfam XPG I-region 178 269 IPR006086 GO:0004518
Cma13g01000 610 PANTHER 5'-3' EXONUCLEASE FAMILY PROTEIN 70 605 - -
Cma13g01000 610 CDD PIN_EXO1 1 243 IPR044752 GO:0046872
Cma13g01000 610 Pfam XPG N-terminal domain 1 37 IPR006085 GO:0004518
Cma13g01000 610 Pfam XPG N-terminal domain 89 132 IPR006085 GO:0004518
Cma13g01000 610 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 70 605 IPR006084 -
Cma13g01000 610 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 39 IPR006084 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01000 K10746 EXO1; exonuclease 1 [EC:3.1.-.-] - csv:101208542 861.292
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g01000 Cma-Chr13:7725033 Cma18g00445 Cma-Chr18:2455435 4.58E-87 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g234 . . . . . . . . Cmo13g01036 . . . . . . Cpe20g00142 . . . . . . . . . . . . . . . Cone2ag0752 . . . Lsi02g00221 Csa01g00703 Chy12g01409 Cme12g01843 . . . . . Bpe15g00519 . . Sed01g1757 . . Cma13g01000 . Car13g00834 . . . Bhi08g01277 Tan05g2208 Cmetu12g1384 Lac10g0276 . . . Cla04g01060 Cam04g1103 Cec01g1617 Cco01g1663 Clacu04g1127 Cmu04g1111 Cre01g1413 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011036 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g01000 Cma_Chr13 FPKM 2.175155 2.5108 0.304626 0.267487 6.393609 7.155205 6.938633 0.0 0.057607 0.0