Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g01001 ATGTTGTCGCACTGGCCAAAAGCTCGAGACAATAGCAATGGCGGAGAAAATGGCGGGAGGGATAGCAAATGTGGAAGCAGAGACACAAAAGGATTGCAGCTAAAAGGTAACCTTACGAAGCCACTGGGCAAAAGGCAATATCCATGGAAATGGAGAAATTGCTCAAAATCTTTGTTGCTTGTTGTTGTGACAATGGCGATCAACAACAATAGCGGGGATATCCTGATGCTCGAAGCTCCACCGCTGCCATCTCAACCAGCGTGGCGCGTTTCTGCAGATGCGGAGGTAATCGACGCCTTGCCCTACATCGACGATGACTATGCGGACCCAAGGGTCAAAGCAGAGGTCGATCGATTAGTGGAGGAAGAGATGCGGCGAAGCTCCAAGCGACCTGCCGACTTTCTCAAAGACTTGCCTCCTCTTCCCAAGTTCAAATTTGAGGATCATCCAATGCTTGCGAGAGAGTATGAACGTGTAAGAGCTGGGAGGCCTCCGATGCCTCTCGATGTTGCTAGATATAAATTAGAGACACCGCCTCCAAATAAAAAGAATGACGAAACTGCTTGGAAGCAGACACTTCAGAGAGCTCAATGCCTACTCCAGCATCAAGTGCTGAGGCTGGAAAATTTGGAACTGATGTCAAAATATGGCTCTGATATCTGGAAGCAACACAACAAGCAGTTGGAAGCACTTCTATCAAGAATGCAAAAATTAGCTCAAGAACAGAATGAGAAGATTGAAAAAGTGAACCGTGAAAGGAAATTCCATCAACAAAACGCTGCATATGAGCTTCATGCTTTGTCCACACAATGGAAGGAGCTGTGCGAGAAAAATATGGAAATCCAAGTGGCATGCTCTCAAATAGAGGGTCAAATCCAGGAACTAAGGAGTGAAGCAGCAGAAAAAGGCTGGAATTTGGAAGTCAATGTAGAGAATGGTTCTGTTTCGTTCCCAGTGTCATAA 963 46.11 MLSHWPKARDNSNGGENGGRDSKCGSRDTKGLQLKGNLTKPLGKRQYPWKWRNCSKSLLLVVVTMAINNNSGDILMLEAPPLPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEMRRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPMPLDVARYKLETPPPNKKNDETAWKQTLQRAQCLLQHQVLRLENLELMSKYGSDIWKQHNKQLEALLSRMQKLAQEQNEKIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACSQIEGQIQELRSEAAEKGWNLEVNVENGSVSFPVS 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7728758 7731796 + CmaCh13G010010.1 Cma13g01001 306828

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g01001 320 Coils Coil 221 259 - -
Cma13g01001 320 Coils Coil 278 298 - -
Cma13g01001 320 PANTHER BCAS2 PROTEIN 80 303 IPR008409 GO:0006397
Cma13g01001 320 PANTHER PRE-MRNA-SPLICING FACTOR SPF27 80 303 - -
Cma13g01001 320 Pfam Breast carcinoma amplified sequence 2 (BCAS2) 95 301 IPR008409 GO:0006397
Cma13g01001 320 MobiDBLite consensus disorder prediction 1 39 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g01001 K12861 BCAS2; pre-mRNA-splicing factor SPF27 - csv:101218284 499.975
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00060 Cma-Chr18:262296 Cma13g01001 Cma-Chr13:7728758 2.85E-30 transposed
Cma18g00061 Cma-Chr18:263163 Cma13g01001 Cma-Chr13:7728758 2.42E-21 transposed
Cma13g01001 Cma-Chr13:7728758 Cma18g00059 Cma-Chr18:260669 7.52E-28 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g245 Blo04g00840 . . . . . . . Cmo13g01037 Cmo18g00046 . . . . . Cpe20g00141 . . . . . . . . . . . . . . . Cone2ag0749 . . . Lsi02g00220 Csa01g00702 Chy12g01410 Cme12g01844 . . . . . Bpe15g00522 Bma03g00906 . Sed01g1756 . . Cma13g01001 . Car13g00835 . Cpe09g01123 . Bhi08g01275 Tan05g2212 Cmetu12g2133 Lac10g0275 Hepe07g2366 . . Cla04g01061 Cam04g1104 Cec01g1618 Cco01g1665 Clacu04g1128 Cmu04g1112 Cre01g1414 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005369 2 1 0 2 1 1 1 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 5 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g01001 Cma_Chr13 FPKM 26.412252 29.926243 22.232185 21.710512 34.266468 31.770697 28.837889 33.445065 32.997326 29.717688